Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0980
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    27   0.17 
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    27   0.17 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.5  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 296 VLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAG 409
           +L +EY+    P  ES +E    E+ S +GCE+ W  G
Sbjct: 99  ILLEEYI----PRVESVVETCKKEVTSTEGCEVAWQFG 132


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 296 VLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAG 409
           +L +EY+    P  ES +E    E+ S +GCE+ W  G
Sbjct: 73  ILLEEYI----PRVESVVETCKKEVTSTEGCEVAWQFG 106


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 505 LHFFNPPTLPEDPNSTVAS 561
           LH+  PPTL E  +S V S
Sbjct: 364 LHYRQPPTLSESYSSYVNS 382


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +1

Query: 418 NCQDHKEETEAQVPWVSSHCH*VRPS*LLLHFFNPPTLPEDPNS 549
           N      +T    PWV      V P  L++  +N P+   D +S
Sbjct: 326 NVHFRSPQTHVMAPWVRRVFIHVLPRLLVMRRYNTPSKRSDYDS 369


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 587 TLRSVTTSASASCLVPCCSTP 649
           T  SVT S SAS  + C  +P
Sbjct: 880 TSMSVTISLSASVTIACLFSP 900


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,504
Number of Sequences: 438
Number of extensions: 3230
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)