Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0980
(695 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 49 3e-06
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta... 48 8e-06
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta... 46 2e-05
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil... 37 0.011
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil... 37 0.011
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim... 32 0.42
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 30 1.3
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea... 29 2.2
At2g22810.1 68415.m02707 1-aminocyclopropane-1-carboxylate synth... 29 3.9
At2g27810.2 68415.m03372 xanthine/uracil permease family protein... 28 5.1
At2g27810.1 68415.m03371 xanthine/uracil permease family protein... 28 5.1
>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 372
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Frame = +1
Query: 508 HFFNPPTLP---EDPNSTVASDVQALLTADFEIGHYIRERVVSRAVLLYTGEGL 660
+FF+PP +P ED + A D+Q L+ D++IG IRE+++ RAV +TGE +
Sbjct: 247 NFFSPPEVPDEDEDIDEERAEDLQNLMEQDYDIGSTIREKIIPRAVSWFTGEAM 300
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/77 (31%), Positives = 37/77 (48%)
Frame = +3
Query: 21 ELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPIL 200
E+ + ++ K D+ E + KG+P FW +N ++SE + E DE L
Sbjct: 96 EIVNGTTEVELAPEDDTKVDQGEEKTAEE--KGVPSFWLTALKNNDVISEEVTERDEGAL 153
Query: 201 KCLQDIKVQMHEDPISF 251
K L+DIK E+P F
Sbjct: 154 KYLKDIKWCKIEEPKGF 170
Score = 44.8 bits (101), Expect = 6e-05
Identities = 31/90 (34%), Positives = 40/90 (44%)
Frame = +2
Query: 239 PHKLHLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGXXX 418
P LEF+F N YF NTVLTK Y M DE+ PL + G EI+W G
Sbjct: 167 PKGFKLEFFFDTNPYFKNTVLTKSYHM---IDEDEPL------LEKAMGTEIDWYPGKCL 217
Query: 419 XXXXXXXXXXXXSRGSVRTVTKSVQADSFF 508
S+ + + +TK +SFF
Sbjct: 218 TQKILKKKPKKGSK-NTKPITKLEDCESFF 246
>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 374
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +1
Query: 508 HFFNPPTLP---EDPNSTVASDVQALLTADFEIGHYIRERVVSRAVLLYTGEGL 660
+FFNPP +P ED + A ++Q L+ D++IG IRE+++ AV +TGE +
Sbjct: 246 NFFNPPQVPDDDEDIDEERAEELQNLMEQDYDIGSTIREKIIPHAVSWFTGEAI 299
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +3
Query: 36 VQNAAITEG--EEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCL 209
V A EG E+ K D+ E + KG+P FW +N ++SE + E DE L L
Sbjct: 98 VNGATEVEGAPEDAKMDQGDEKTAEE--KGVPSFWLTALKNNDVISEEITERDEGALIYL 155
Query: 210 QDIKVQMHEDPISF 251
+DIK E+P F
Sbjct: 156 KDIKWCKIEEPKGF 169
Score = 42.3 bits (95), Expect = 3e-04
Identities = 29/90 (32%), Positives = 41/90 (45%)
Frame = +2
Query: 239 PHKLHLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGXXX 418
P LEF+F N YF NT+LTK Y M DE+ PL + G EI+W G
Sbjct: 166 PKGFKLEFFFDQNPYFKNTLLTKAYHM---IDEDEPL------LEKAIGTEIDWYPGKCL 216
Query: 419 XXXXXXXXXXXXSRGSVRTVTKSVQADSFF 508
++ + + +TK+ +SFF
Sbjct: 217 TQKILKKKPKKGAK-NAKPITKTEDCESFF 245
>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 379
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/72 (37%), Positives = 38/72 (52%)
Frame = +3
Query: 36 VQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQD 215
V+ AA E+ +DK+ E KG+PDFW +N + +E + E DE LK L+D
Sbjct: 104 VEGAAEEVKSEQGEDKSAEE------KGVPDFWLIALKNNEITAEEITERDEGALKYLKD 157
Query: 216 IKVQMHEDPISF 251
IK E+P F
Sbjct: 158 IKWSRVEEPKGF 169
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/54 (37%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Frame = +1
Query: 508 HFFNPPTLP---EDPNSTVASDVQALLTADFEIGHYIRERVVSRAVLLYTGEGL 660
+FF+PP +P ED + +A ++Q + D++IG I+E+++S AV +TGE +
Sbjct: 246 NFFSPPQVPDDDEDLDDDMADELQGQMEHDYDIGSTIKEKIISHAVSWFTGEAV 299
Score = 44.0 bits (99), Expect = 1e-04
Identities = 30/90 (33%), Positives = 40/90 (44%)
Frame = +2
Query: 239 PHKLHLEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGXXX 418
P LEF+F N YF NTVLTK Y M DE+ P+ + G EI W G
Sbjct: 166 PKGFKLEFFFDQNPYFKNTVLTKTYHM---IDEDEPI------LEKALGTEIEWYPGKCL 216
Query: 419 XXXXXXXXXXXXSRGSVRTVTKSVQADSFF 508
S+ + + +TK+ +SFF
Sbjct: 217 TQKILKKKPKKGSK-NTKPITKTEDCESFF 245
>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
protein similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 329
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Frame = +1
Query: 508 HFFNPPTLPE--------DPNSTVASDVQALLTADFEIGHYIRERVVSRAVLLYTGEGL 660
+FF PP +PE D ++ + ++Q L+ D++I IR++++ AV +TGE L
Sbjct: 252 NFFKPPEIPEIDEVDDYDDFDTIMTEELQNLMDQDYDIAVTIRDKLIPHAVSWFTGEAL 310
Score = 35.1 bits (77), Expect = 0.045
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 114 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHED 239
+G+P+FW + ML+ + E DE LK L+DI+ ED
Sbjct: 126 EGVPNFWLIAMKTNEMLANEITERDEAALKYLKDIRSCRVED 167
Score = 31.1 bits (67), Expect = 0.73
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 LEFYFAPNEYFTNTVLTKEYLMKCKPDEESPLEFEGPEIYSCKGCEINWNAGXXXXXXXX 433
LEF F N YF N+VL+K Y + DE +GP + G +I W G
Sbjct: 174 LEFLFDSNLYFKNSVLSKTYHVN---DE------DGPVLEKVIGTDIEWFPGKCLTHKVV 224
Query: 434 XXXXXXXSRGSVRTV--TKSVQADSFF 508
V + TK+ +SFF
Sbjct: 225 VKKKTKKGPKKVNNIPMTKTENCESFF 251
>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
protein similar to SP|Q01105|SET protein (HLA-DR
associated protein II) (PHAPII) (Phosphatase 2A
inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
PF00956: Nucleosome assembly protein (NAP)
Length = 256
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 111 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHED 239
+K IPDFW F + L E++ E D+ I K L + V+ +D
Sbjct: 70 IKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKD 112
>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 595
Score = 31.9 bits (69), Expect = 0.42
Identities = 21/77 (27%), Positives = 39/77 (50%)
Frame = +3
Query: 3 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQE 182
D T+E EL AV+NA++ GE+ + IE K IP Y I+ + + +
Sbjct: 442 DKTDEAELQSAVENASLLLGEQ--GTRVIEYTSYAETKTIPGH-YVIYWELLVKDQTNPP 498
Query: 183 HDEPILKCLQDIKVQMH 233
+DE + +C +++ ++
Sbjct: 499 NDEVMARCCLEMEESLN 515
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 3 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGI 122
DD +EEE + + +I E EEK D +E P D N+K +
Sbjct: 43 DDDDEEEAVSELNSLSIKE-EEKPDS-ILEEPEDSNIKAV 80
>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P24733 myosin heavy chain,
striated muscle [Aequipecten irradians]
Length = 342
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 12 EEEELARAVQNAAITEGEEKKDDKAIEPPMDPNV 113
+ E+L + VQN A+ +EKK+D P D NV
Sbjct: 214 QNEKLLKKVQNCAVEHNKEKKEDIDGPGPGDNNV 247
>At2g22810.1 68415.m02707 1-aminocyclopropane-1-carboxylate synthase
4 / ACC synthase 4 (ACS4) identical to gi:940370
[GB:U23481]
Length = 474
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -2
Query: 382 LARINFRTFKF*WTLFIGLALH*VLFSKYCICEVFIWSKVEFQVKL---MGSSCIC 224
L I + K LF + + +L SK E+ +W K+ ++VKL GSSC C
Sbjct: 345 LEAIGIKCLKSNAGLFCWVDMRPLLRSKTFEAEMDLWKKIVYEVKLNISPGSSCHC 400
>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 660
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 42 NAAITEGEEKKDDKAIEPPMDPNVKGIP 125
+AA+T GE KD K PP P +P
Sbjct: 82 SAAVTNGETDKDKKEKPPPPPPGSVAVP 109
>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 709
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 42 NAAITEGEEKKDDKAIEPPMDPNVKGIP 125
+AA+T GE KD K PP P +P
Sbjct: 82 SAAVTNGETDKDKKEKPPPPPPGSVAVP 109
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,406,699
Number of Sequences: 28952
Number of extensions: 270876
Number of successful extensions: 813
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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