Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0979
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  103   1e-22
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   3e-13
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.003
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.003
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  103 bits (247), Expect = 1e-22
 Identities = 48/84 (57%), Positives = 54/84 (64%)
 Frame = +3

Query: 255 DITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFFTIFIGVNI 434
           D+ +HDTYYVVAHFHYVLS              +   TG   N    KI F+ +FIGVNI
Sbjct: 68  DVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNI 127

Query: 435 TFFPQHFLGLAGIPRRYSDYPDSY 506
           TFFPQHFLGLAG PRRYSD+ D Y
Sbjct: 128 TFFPQHFLGLAGFPRRYSDFADGY 151



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 44/66 (66%), Positives = 56/66 (84%)
 Frame = +1

Query: 55  IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGV 234
           +++DTRAYFT+AT+IIAVPTGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGV
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60

Query: 235 ILANSS 252
           ILANSS
Sbjct: 61  ILANSS 66


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 32/47 (68%), Positives = 35/47 (74%)
 Frame = +3

Query: 366 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDSY 506
           TG   N    KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D Y
Sbjct: 19  TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGY 65


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +3

Query: 450 HFLGLAGIPRRYSDYPDSY 506
           HFLGLAG PRRYSD+ D Y
Sbjct: 1   HFLGLAGFPRRYSDFADGY 19


>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +3

Query: 450 HFLGLAGIPRRYSDYPDSY 506
           HFLGLAG PRRYSD+ D Y
Sbjct: 1   HFLGLAGFPRRYSDFADGY 19


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +3

Query: 450 HFLGLAGIPRRYSDYPDSY 506
           HFLGLAG PRRYSD+ D Y
Sbjct: 1   HFLGLAGFPRRYSDFADGY 19


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +3

Query: 450 HFLGLAGIPRRYSDYPDSY 506
           HFLGLAG PRRYSD+ D Y
Sbjct: 1   HFLGLAGFPRRYSDFADGY 19


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +3

Query: 450 HFLGLAGIPRRYSDYPDSY 506
           HFLGLAG PRRYSD+ D Y
Sbjct: 1   HFLGLAGFPRRYSDFADGY 19


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +3

Query: 450 HFLGLAGIPRRYSDYPDSY 506
           HFLGLAG PRRYSD+ D Y
Sbjct: 1   HFLGLAGFPRRYSDFADGY 19


>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 34  HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL 183
           HH+ T+ I +         T+I   PT I +   +  +H T IN +P ++
Sbjct: 14  HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTVI 63


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +2

Query: 353 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 475
           + FIY   + FL +KN  F+  YW+   YN F        W T
Sbjct: 14  VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,339,560
Number of Sequences: 59808
Number of extensions: 203625
Number of successful extensions: 302
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)