Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0978
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb...    28   1.4  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    27   2.5  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   2.5  
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    27   3.3  
SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po...    25   7.6  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   7.6  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   7.6  

>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -3

Query: 536 NFASEEIDLGLDLTSPIVIAAPMSLTMML-SARETKSGSLSNDVLKGKSSGS-ERPQDAA 363
           N  SEE D+      P V+  PM +++   S +E   G   N   + K+SG    PQD A
Sbjct: 163 NLGSEEPDIMSVAVRPGVVDTPMQVSIRNDSNKEAMGGDTHNFFKELKTSGQLVAPQDIA 222

Query: 362 ENADF 348
           +   F
Sbjct: 223 KALSF 227


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 101 ITMSRMR*ELGSKSTSRCGTADTQARARAKMK 6
           I   +MR ELG   T RC   D QA    K+K
Sbjct: 212 ILFGKMRLELGDHVTVRCPKTDLQADIEFKVK 243


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 461 TMMLSARETKSGSLSNDVLKGKSSGSERPQD 369
           ++ LS+   K GS+S+   +G SS S RP D
Sbjct: 84  SLALSSISGKDGSISSQNAEGLSSSSNRPLD 114


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = -3

Query: 422 LSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 330
           LSND L+   S +  P D     + ENAD+SFS  D
Sbjct: 160 LSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195


>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 482 IAAPMSLTMMLSARETKSGSLSNDVLKGKSSGS 384
           ++ P+SL  ML A   KSG +    L+  ++GS
Sbjct: 356 LSEPLSLAQMLEAGSWKSGRIIAKKLRPSTAGS 388


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 153 ERISRSQQFTDFIEQV*DHDVKDA 82
           E +SR QQF D +  +   ++KDA
Sbjct: 63  EEVSRRQQFVDKLRTILSTEIKDA 86


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +3

Query: 519  LFGREVGPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQLVIN 641
            +  R++GP V  F+ K+P  L +   ++  + + V +LV+N
Sbjct: 972  IHNRKMGPTVKKFISKLP--LLNINVDLLPLTKNVLRLVLN 1010


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,890
Number of Sequences: 5004
Number of extensions: 43936
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)