Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0978
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0149 - 16826019-16826023,16826065-16826635                       31   0.85 
12_01_0204 + 1539859-1540158                                           30   1.5  
05_04_0249 - 19365952-19366020,19366097-19366211,19366450-193665...    29   4.5  
01_05_0004 + 16856834-16857278,16857320-16857324                       29   4.5  
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675...    28   6.0  
05_03_0478 - 14526180-14526578                                         28   6.0  

>01_04_0149 - 16826019-16826023,16826065-16826635
          Length = 191

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -3

Query: 470 MSLTMMLSARETKSGSLSNDVLKGKSSGSERPQDAAENADFSFS 339
           MSL  + +  +  + +LS + +KGK +G+E  QD   + +F FS
Sbjct: 74  MSLPSLANEEKADAPTLSEEGIKGKLNGAEITQDEYASDEFHFS 117


>12_01_0204 + 1539859-1540158
          Length = 99

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 166 YAGSWSPPGASDIINFSGRVTDVKADD 246
           +AGSW+  G   + +F GRVT V+  D
Sbjct: 38  HAGSWNGEGQGGLAHFGGRVTRVRRGD 64


>05_04_0249 -
           19365952-19366020,19366097-19366211,19366450-19366520,
           19366759-19366797,19367156-19367238,19367366-19367438,
           19367826-19367884,19368457-19368511
          Length = 187

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 506 LDLTSPIVIAAPMSLTMMLSARETKSGSLSNDVLKGKSS 390
           L L+SP+ +AAP  +  ++S R   + +  N V+ G+ S
Sbjct: 5   LSLSSPLFLAAPPKVQGVISCRAALASASWNSVMLGRKS 43


>01_05_0004 + 16856834-16857278,16857320-16857324
          Length = 149

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -3

Query: 470 MSLTMMLSARETKSGSLSNDVLKGKSSGSERPQDAAENADFSFS 339
           MSL  + +  +  + +LS + +KGK +G+E  QD   + +  FS
Sbjct: 32  MSLPSLANEEKADAPTLSEEGIKGKLNGAEITQDEYASDELHFS 75


>05_04_0307 +
           20066169-20066410,20066803-20066858,20067490-20067581,
           20068400-20068502,20068623-20068760,20068898-20069148
          Length = 293

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 52  RDVDFEPNSQRILDIVISNLFNEIGELLRAAD 147
           RDV+  PN + + D+   N  +E+ ELL+ AD
Sbjct: 219 RDVELSPNPEEVADVKYVNR-DELKELLKKAD 249


>05_03_0478 - 14526180-14526578
          Length = 132

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +2

Query: 533 SWTSRQQLPREDPCLPDGLRS---RGQPCSGVRRPTRH 637
           SW  RQ+   ED    DG R    RGQ     RRP RH
Sbjct: 54  SWARRQRRDEEDHRQHDGYRGARRRGQEDHRRRRPRRH 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,202,557
Number of Sequences: 37544
Number of extensions: 328732
Number of successful extensions: 941
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)