Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0978
         (679 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         26   0.95 
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            25   2.2  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   2.9  
Y17700-1|CAA76820.1|  122|Anopheles gambiae hypothetical protein...    24   5.1  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 26.2 bits (55), Expect = 0.95
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 389  GSERPQDAAENADFSFSGTD*C*NSGN 309
            GSE+P++A E +  + SGTD   +SG+
Sbjct: 1348 GSEKPKNAIEPSQEAVSGTDNANDSGD 1374


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 587 LRSRGQPCSGVRRPTRHQQITVNYSNDTCES 679
           L +   P  G RRPT++QQI   +++D  E+
Sbjct: 16  LANEFNPNRGRRRPTKNQQIYGVWADDDSEN 46


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 437  TKSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD 330
            T S ++ ND +K  +SGS + Q   E   F F   D
Sbjct: 1268 TDSVTIKNDPMK--TSGSTQQQQQMERQQFGFGNND 1301


>Y17700-1|CAA76820.1|  122|Anopheles gambiae hypothetical protein
           protein.
          Length = 122

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 546 VNNFLEKIPVYLTDYAAEVS 605
           VN   EK+P YL++ +A V+
Sbjct: 88  VNAIYEKLPAYLSEVSARVN 107


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 623,521
Number of Sequences: 2352
Number of extensions: 12335
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68159265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)