Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0978
         (679 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC071853-1|AAH71853.1|  356|Homo sapiens GREB1 protein protein.        31   3.8  
AK092754-1|BAC03965.1|  615|Homo sapiens protein ( Homo sapiens ...    31   5.0  
AJ512501-1|CAD54734.1| 4007|Homo sapiens extracellular matrix pr...    30   6.6  
AL356299-3|CAI17960.1|  862|Homo sapiens itchy homolog E3 ubiqui...    30   8.7  
AL109923-5|CAI21459.1|  862|Homo sapiens itchy homolog E3 ubiqui...    30   8.7  
AF095745-1|AAK39399.1|  862|Homo sapiens ubiquitin protein ligas...    30   8.7  
AF038564-1|AAC04845.1|  739|Homo sapiens atrophin-1 interacting ...    30   8.7  
AB056663-1|BAB39389.1|  862|Homo sapiens ubiquitin protein ligas...    30   8.7  

>BC071853-1|AAH71853.1|  356|Homo sapiens GREB1 protein protein.
          Length = 356

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -3

Query: 272 DTTQMQELKSSALTSVTRPEKLMMSDAPGGLQEPA--*PSRRRGSAALNNSPISLNKFEI 99
           D+ + Q+L  + L ++ RP  L  S  PG   +PA      R G  A    P+SL + ++
Sbjct: 272 DSPKCQQLAKNNLLALPRPSALGSSACPGRPGDPALLWAKARGGMGAAGLGPLSLLESDV 331

Query: 98  TMSRMR 81
              R+R
Sbjct: 332 ASMRVR 337


>AK092754-1|BAC03965.1|  615|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35435 fis, clone SMINT2002620. ).
          Length = 615

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -1

Query: 430 AVASATTFSRASPPEAKDLRTRLKMRISP---SAEPTDAETLGTARTKLSRVP 281
           A    ++F R S     DLRT    R+     S+  TD++ LG+ RTK  R P
Sbjct: 259 AFLKKSSFKRKSTSNLADLRTAHDARVPQRTLSSSSTDSQKLGSGRTKRWRSP 311


>AJ512501-1|CAD54734.1| 4007|Homo sapiens extracellular matrix protein
            protein.
          Length = 4007

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 163  GYAGSWSPPGASDIINFSGRVTDVKADDFSSCICVVS 273
            G A S S PG  D + ++G+V   + +D  SC  V++
Sbjct: 2593 GTASSSSQPGQQDYVEYAGQVQFDEREDTKSCTIVIN 2629


>AL356299-3|CAI17960.1|  862|Homo sapiens itchy homolog E3 ubiquitin
           protein ligase (mouse) protein.
          Length = 862

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -3

Query: 509 GLDLTSPIVIAAPMSLTMMLSARETKSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD 330
           GL L S +V       T   SA +   GS S D  +  ++GS+ P+DA    +   SG +
Sbjct: 141 GLQLESEVVTNG--ETTCSESASQNDDGSRSKDETRVSTNGSDDPEDAGAGENRRVSGNN 198


>AL109923-5|CAI21459.1|  862|Homo sapiens itchy homolog E3 ubiquitin
           protein ligase (mouse) protein.
          Length = 862

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -3

Query: 509 GLDLTSPIVIAAPMSLTMMLSARETKSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD 330
           GL L S +V       T   SA +   GS S D  +  ++GS+ P+DA    +   SG +
Sbjct: 141 GLQLESEVVTNG--ETTCSESASQNDDGSRSKDETRVSTNGSDDPEDAGAGENRRVSGNN 198


>AF095745-1|AAK39399.1|  862|Homo sapiens ubiquitin protein ligase
           ITCH protein.
          Length = 862

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -3

Query: 509 GLDLTSPIVIAAPMSLTMMLSARETKSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD 330
           GL L S +V       T   SA +   GS S D  +  ++GS+ P+DA    +   SG +
Sbjct: 141 GLQLESEVVTNG--ETTCSESASQNDDGSRSKDETRVSTNGSDDPEDAGAGENRRVSGNN 198


>AF038564-1|AAC04845.1|  739|Homo sapiens atrophin-1 interacting
           protein 4 protein.
          Length = 739

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -3

Query: 509 GLDLTSPIVIAAPMSLTMMLSARETKSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD 330
           GL L S +V       T   SA +   GS S D  +  ++GS+ P+DA    +   SG +
Sbjct: 18  GLQLESEVVTNG--ETTCSESASQNDDGSRSKDETRVSTNGSDDPEDAGAGENRRVSGNN 75


>AB056663-1|BAB39389.1|  862|Homo sapiens ubiquitin protein ligase
           Itch protein.
          Length = 862

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -3

Query: 509 GLDLTSPIVIAAPMSLTMMLSARETKSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD 330
           GL L S +V       T   SA +   GS S D  +  ++GS+ P+DA    +   SG +
Sbjct: 141 GLQLESEVVTNG--ETTCSESASQNDDGSRSKDETRVSTNGSDDPEDAGAGENRRVSGNN 198


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,564,890
Number of Sequences: 237096
Number of extensions: 1631799
Number of successful extensions: 4294
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4294
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)