Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0977
         (377 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   1.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   1.0  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    20   7.2  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    20   9.5  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
 Frame = -2

Query: 193 GVDGSNDDGLRD----NGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGN 26
           G DG + D +      NG L   F D+        G    ++G    HDE+     T GN
Sbjct: 68  GDDGDDKDSITSDGGKNGKLSDKFLDDEMSKKSCQGCEMPSAGLCGSHDEIPDISSTRGN 127

Query: 25  SRS 17
           + +
Sbjct: 128 NNN 130


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
 Frame = -2

Query: 193 GVDGSNDDGLRD----NGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGN 26
           G DG + D +      NG L   F D+        G    ++G    HDE+     T GN
Sbjct: 16  GDDGDDKDSITSDGGKNGKLSDKFLDDEMSKKSCQGCEMPSAGLCGSHDEIPDISSTRGN 75

Query: 25  SRS 17
           + +
Sbjct: 76  NNN 78


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
 Frame = -2

Query: 193 GVDGSNDDGLRD----NGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGN 26
           G DG + D +      NG L   F D+        G    ++G    HDE+     T GN
Sbjct: 199 GDDGDDKDSITSDGGKNGKLSDKFLDDEMSKKSCQGCEMPSAGLCGSHDEIPDISSTRGN 258

Query: 25  SRS 17
           + +
Sbjct: 259 NNN 261


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 121 GLGLDFSGSNRNTSG 77
           G+ +DF G N + SG
Sbjct: 78  GVAVDFLGENNDDSG 92


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 175 DDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSG 77
           D   R    +F L D+NN  G      + +T+G
Sbjct: 364 DPSKRKGSYIFRLPDENNNGGFWVGYEDTDTAG 396


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,961
Number of Sequences: 336
Number of extensions: 575
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7803226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)