Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0977
         (377 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0029 - 490433-490591,490930-491019,491860-492608,492996-49...    27   3.7  
04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134...    27   3.7  
08_02_1152 + 24720397-24720636,24720739-24720951,24721617-247216...    27   4.9  
06_03_1153 - 28047125-28047751                                         27   4.9  
08_02_0974 + 23200053-23200167,23200184-23200665                       27   6.5  

>09_01_0029 -
           490433-490591,490930-491019,491860-492608,492996-493047,
           493175-493276,493363-493494,493882-494109,494172-494321
          Length = 553

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -2

Query: 205 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDV--HDELHKRRGTG 32
           D   G +  +D+G  D+    S  DDN+G     SG   + + DV     D+ ++  G+G
Sbjct: 242 DEDEGEEDDDDEGEEDDDEHRSENDDNDGAETGRSGEQADAATDVTCCKGDDTNEGIGSG 301

Query: 31  G 29
           G
Sbjct: 302 G 302


>04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,
            1342225-1342799,1343596-1343703,1345823-1346155,
            1346783-1349306
          Length = 1630

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 112  LDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSN 14
            +DFSG N  T+ D  V    +K++G  G ++ N
Sbjct: 1595 MDFSGDNIQTTLDPMVSSSNNKKKGKKGKNKKN 1627


>08_02_1152 +
           24720397-24720636,24720739-24720951,24721617-24721697,
           24721781-24721867,24721970-24722065,24722179-24722232,
           24722326-24723375,24723468-24723507,24723551-24723756
          Length = 688

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 130 DNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRS 2
           D + +G DFS  N     D D +D+++   GTG  S S+ +RS
Sbjct: 354 DPDDVGQDFSQDNTKVEPDPDDNDDMNVDVGTGA-SWSSVSRS 395


>06_03_1153 - 28047125-28047751
          Length = 208

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 127 NNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGN 26
           N G GLD S S     GD+  +D+L+   G GGN
Sbjct: 163 NGGGGLDGSSSIGTNGGDIGGNDDLY---GGGGN 193


>08_02_0974 + 23200053-23200167,23200184-23200665
          Length = 198

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -2

Query: 208 RDNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGS 95
           R  +   DGS        GA F+L D N G G   SGS
Sbjct: 93  RKKKSRRDGSTRKKEASEGARFALEDGNGGTGYVMSGS 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,045,480
Number of Sequences: 37544
Number of extensions: 74864
Number of successful extensions: 255
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)