Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0977
         (377 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   1.6  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   2.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   6.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   8.4  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 16/65 (24%), Positives = 26/65 (40%)
 Frame = -2

Query: 205 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGN 26
           DNR   +  N +   DN    +  +DN   G   +G+ +N +         +KR G   N
Sbjct: 462 DNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQN 521

Query: 25  SRSND 11
              N+
Sbjct: 522 DNQNN 526


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
          protein.
          Length = 208

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 61 DELHKRRGTGGNSR 20
          D  HKRR TGG  +
Sbjct: 6  DHWHKRRATGGKRK 19


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 315 NECTKRILVSMKIK 356
           NE T +++VSMKIK
Sbjct: 345 NEDTLQMVVSMKIK 358


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 124 NGLGLDFSGSNRNTSGDVDVHDE 56
           NG G+    +N    G+VD  D+
Sbjct: 372 NGAGVGAMNANGEAVGEVDEDDD 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,240
Number of Sequences: 438
Number of extensions: 770
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)