Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0977
         (377 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18810.1 68416.m02389 protein kinase family protein contains ...    31   0.19 
At1g21660.1 68414.m02711 expressed protein low similarity to SP|...    31   0.19 
At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA) iden...    29   1.0  
At3g44690.1 68416.m04806 expressed protein                             27   3.1  
At3g44370.1 68416.m04767 expressed protein weak similarity to At...    27   4.1  
At2g16250.1 68415.m01861 leucine-rich repeat transmembrane prote...    26   7.2  
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s...    26   9.6  
At1g34550.1 68414.m04294 expressed protein contains Pfam profile...    26   9.6  

>At3g18810.1 68416.m02389 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 700

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 17/68 (25%), Positives = 34/68 (50%)
 Frame = -2

Query: 205 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGN 26
           +N  G +G+N++   +N    +  D+NNG   D + +  N +G+   ++  +   G   N
Sbjct: 71  NNNDGNNGNNNNDNNNNNNGNNNNDNNNGNNKDNNNNGNNNNGN---NNNGNDNNGNNNN 127

Query: 25  SRSNDNRS 2
             +NDN +
Sbjct: 128 GNNNDNNN 135



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = -2

Query: 205 DNRGGVDGSNDDGL-RDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGG 29
           +N G  +  N++G  +DN    +  + NN  G D +G+N N + +    D  ++  G G 
Sbjct: 87  NNNGNNNNDNNNGNNKDNNNNGNNNNGNNNNGNDNNGNNNNGNNN----DNNNQNNGGGS 142

Query: 28  NSRS 17
           N+RS
Sbjct: 143 NNRS 146


>At1g21660.1 68414.m02711 expressed protein low similarity to
           SP|O14976 Cyclin G-associated kinase (EC 2.7.1.-) {Homo
           sapiens}; supporting cDNA gi|20466222|gb|AY099577.1|
          Length = 523

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -2

Query: 157 NGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDN 8
           NG+LF    D + +    + +NR  S D DV   L+K   +G NS+S+ N
Sbjct: 64  NGSLF----DGDDIFFPANSTNRKVSNDFDVFAGLNKSSSSGDNSKSSLN 109


>At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA)
           identical to nuclear RNA binding protein GI:6492264 from
           [Arabidopsis thaliana]
          Length = 355

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 133 DDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSN 14
           D NNG    +SG     SG+ DV    ++RRG GG  R +
Sbjct: 86  DGNNG----YSGGYTKPSGEGDVSKSSYERRGGGGAPRGS 121


>At3g44690.1 68416.m04806 expressed protein 
          Length = 1176

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 139  LFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDN 8
            LFDD + + LD     R   GDV V+  +  + G      SND+
Sbjct: 998  LFDDRDQVYLDDERLQRRNGGDVKVYANMRYQDGRQEVYHSNDS 1041


>At3g44370.1 68416.m04767 expressed protein weak similarity to
           AtOXA1 [Arabidopsis thaliana] GI:6624207
          Length = 338

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -2

Query: 205 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGS 95
           D+  GV GSND GL  + ++ SL   +NG GL+F  S
Sbjct: 60  DSIAGV-GSNDHGLEFDDSIASL--GSNGHGLEFGDS 93


>At2g16250.1 68415.m01861 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 915

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 196 GGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDV 71
           GG  G   +GLR++G+  S   +NN  G + S S R  S ++
Sbjct: 861 GGGGGGGGNGLRNSGSQGSSGRNNNNNG-NSSSSRRRQSSEI 901


>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
           similarity to flagelliform silk protein [Nephila
           clavipes] gi|7106224|gb|AAF36090
          Length = 1504

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 193 GVDGSNDDGLRDNGALFSLFDDNNGLGLDF 104
           G+D   D GL D+G +  LFD   G GL +
Sbjct: 535 GLDDGLDFGLVDDGLVVGLFDVFVGTGLSW 564


>At1g34550.1 68414.m04294 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616);
           expression supported by MPSS
          Length = 812

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
 Frame = -2

Query: 139 LFDDNNGLGLDF--SGSNR-----NTSGDVDVHDELHKRRGTGGNSRSNDNR 5
           L DD+N     F  SG++R     N  G    H  +  R G GG ++ N+NR
Sbjct: 87  LIDDDNAKMAQFRQSGTDRFSVRGNGGGASSDHVTIGIRNGVGGATKGNNNR 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,102,852
Number of Sequences: 28952
Number of extensions: 58818
Number of successful extensions: 192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)