Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0976
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8318| Best HMM Match : OTU (HMM E-Value=7.4e-19)                    28   6.5  
SB_2123| Best HMM Match : PKD_channel (HMM E-Value=0)                  28   8.6  

>SB_8318| Best HMM Match : OTU (HMM E-Value=7.4e-19)
          Length = 728

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 552 NRHILSPS*KLTTCVDRHPNPFICFKK 472
           N+H   PS K++ C++ H +  IC K+
Sbjct: 376 NKHASCPSIKISKCIENHRHSRICSKQ 402


>SB_2123| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 672

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 416 KDISLLADFRIVSVSYLVYFLKQ-INGFG*RSTHVVSFHEGLNMCL 550
           K    +A+F IV V+ L+ F +     FG RST   SF + L  CL
Sbjct: 320 KSAKSIANFFIVFVAVLLAFTQLGFLAFGSRSTPYSSFFQSLRSCL 365


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,453,424
Number of Sequences: 59808
Number of extensions: 309816
Number of successful extensions: 387
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)