Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0975
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    28   0.39 
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    26   1.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   6.3  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    24   8.3  

>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 28.3 bits (60), Expect = 0.39
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 209 YVQNIPTYXLAHLWRCPVLNRSLCEWA 129
           Y+QNIP       +RC  ++ ++C+W+
Sbjct: 466 YLQNIPIQKKYESYRCLFISGTICQWS 492


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -1

Query: 250 LTSPLFEIRHWNGVTSKIYRLTXWLICGVVP 158
           L  P F + HW     + Y    WL C  +P
Sbjct: 251 LEMPFFALSHWYAFRIEDYDTPTWLSCARLP 281


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 241  PLFEIRHWNGVTSKIY 194
            PLF ++ WN +TS  +
Sbjct: 2155 PLFSMQRWNSITSMFF 2170


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 185 SKSVYFGRNTVPVSDLE*WAREPELLC 265
           S +VYFGRN +   ++   A E  +LC
Sbjct: 452 SGNVYFGRNVILKGNIVIVASENTILC 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,877
Number of Sequences: 5004
Number of extensions: 25609
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)