Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0975
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839...    30   0.49 
10_06_0172 + 11473892-11474896                                         29   1.5  
07_03_0740 - 21102015-21102287,21102402-21102555,21102647-211028...    26   7.9  

>02_04_0515 +
           23582105-23583519,23583613-23583741,23583835-23583970,
           23584051-23584139,23584236-23584347,23584427-23584533,
           23584630-23584723
          Length = 693

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 15  PNERRTLLRIPEECSGGCSSQRSMEHPRR 101
           P+E RT  R P E SGG  S+RS E P +
Sbjct: 76  PSEGRTEDREPGEVSGGSGSERSGERPMK 104


>10_06_0172 + 11473892-11474896
          Length = 334

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 28  GRYCGYPRSVRVDARLRDRWNILG 99
           G Y GYP +VRVDA     +N++G
Sbjct: 288 GAYPGYPGAVRVDAATGAGYNVVG 311


>07_03_0740 -
           21102015-21102287,21102402-21102555,21102647-21102884,
           21103008-21103218,21103303-21103442,21103537-21103665,
           21104120-21104960
          Length = 661

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 62  WMLVSEIDGTS*AFFCSHKISTSPTHRGCDLERDNATNEP 181
           W    +I G + +  CS +I T P   G  + R  AT+ P
Sbjct: 224 WSYKDDIGGRTLSVRCSFRIETKPFLNGTTMVRLPATSAP 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,012,253
Number of Sequences: 37544
Number of extensions: 159553
Number of successful extensions: 376
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)