Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0975
         (364 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_13071| Best HMM Match : AMOP (HMM E-Value=2.5)                      27   6.0  
SB_7717| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.0  
SB_56312| Best HMM Match : Calx-beta (HMM E-Value=2)                   26   8.0  
SB_15617| Best HMM Match : Glycoprotein_G (HMM E-Value=4.8)            26   8.0  

>SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 231 SNNGLVSPNCCV-IIPSKIIICL 296
           S NGL+ P CC+  +PS ++ C+
Sbjct: 332 SVNGLMYPECCLNQVPSSLVACV 354


>SB_13071| Best HMM Match : AMOP (HMM E-Value=2.5)
          Length = 139

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 76  RDRWNILGVFLLTQNFYFAHSQRL 147
           R +WNI+GV+++    Y   S+R+
Sbjct: 62  RTKWNIVGVYVIKDRKYCGSSRRI 85


>SB_7717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 242 PIIRDQTLERCYVQNIPTYXLAHLWRC 162
           P   D TL RC+   +P Y  A L RC
Sbjct: 2   PHYADATLHRCHTTPMPHYTDATLHRC 28



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 242 PIIRDQTLERCYVQNIPTYXLAHLWRC 162
           P   D TL RC+   +P Y  A L RC
Sbjct: 50  PHYTDATLHRCHTTPMPHYTDATLHRC 76


>SB_56312| Best HMM Match : Calx-beta (HMM E-Value=2)
          Length = 311

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 34  YCGYPRSVRVDARLRDRWNILGVFLLTQNFYFAHSQ 141
           +C YP  +R + R    W I  V L+ +  +F + Q
Sbjct: 270 FCEYPGELRRNPRKSGTWYISYVILVAKGIHFCNYQ 305


>SB_15617| Best HMM Match : Glycoprotein_G (HMM E-Value=4.8)
          Length = 554

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 222 CLISNNGLVSPNCCVII 272
           CL+ +  LV+ NCCV++
Sbjct: 87  CLVDSENLVASNCCVMM 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,562,459
Number of Sequences: 59808
Number of extensions: 186686
Number of successful extensions: 335
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)