Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0975
         (364 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X04228-2|CAA27809.1|   96|Drosophila melanogaster protein ( Dros...    28   3.2  
X04227-2|CAA27806.1|   96|Drosophila melanogaster URF 2 protein.       28   3.2  
BT004506-1|AAO42670.1| 1545|Drosophila melanogaster AT10293p pro...    27   9.7  
AF495912-1|AAN60444.1| 2576|Drosophila melanogaster nesprin prot...    27   9.7  
AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-P...    27   9.7  

>X04228-2|CAA27809.1|   96|Drosophila melanogaster protein (
           Drosophila mRNA forCc gene from dopa decarboxylase gene
           cluster;  mapping2.0 kb from the 5'end of Ddc gene.  ).
          Length = 96

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 3   TIELPNERRTL-LRIPEECSGGCSSQRSMEHP 95
           +I  P  RRT   R+P   S GCS   S +HP
Sbjct: 11  SIASPASRRTWSARVPTSSSHGCSGPSSSDHP 42


>X04227-2|CAA27806.1|   96|Drosophila melanogaster URF 2 protein.
          Length = 96

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 3   TIELPNERRTL-LRIPEECSGGCSSQRSMEHP 95
           +I  P  RRT   R+P   S GCS   S +HP
Sbjct: 11  SIASPASRRTWSARVPTSSSHGCSGPSSSDHP 42


>BT004506-1|AAO42670.1| 1545|Drosophila melanogaster AT10293p protein.
          Length = 1545

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 250  LTSPLFEIRHWNGVTSKIYRLTXWL 176
            LT PL   R+W  + + ++RL  WL
Sbjct: 1195 LTCPLCTQRNWQQIDNDLWRLEQWL 1219


>AF495912-1|AAN60444.1| 2576|Drosophila melanogaster nesprin protein.
          Length = 2576

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 250  LTSPLFEIRHWNGVTSKIYRLTXWL 176
            LT PL   R+W  + + ++RL  WL
Sbjct: 2222 LTCPLCTQRNWQQIDNDLWRLEQWL 2246


>AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-PD,
             isoform D protein.
          Length = 11707

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 250   LTSPLFEIRHWNGVTSKIYRLTXWL 176
             LT PL   R+W  + + ++RL  WL
Sbjct: 11353 LTCPLCTQRNWQQIDNDLWRLEQWL 11377


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,259,018
Number of Sequences: 53049
Number of extensions: 274626
Number of successful extensions: 586
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 922092336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)