Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0975
         (364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80847-7|AAO91744.1|  778|Caenorhabditis elegans Hypothetical pr...    27   3.0  
U80847-6|AAK68190.1|  796|Caenorhabditis elegans Hypothetical pr...    27   3.0  
U80847-5|AAK68189.1|  793|Caenorhabditis elegans Hypothetical pr...    27   3.0  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    26   7.0  
AF024491-4|AAZ82855.1|  365|Caenorhabditis elegans Hypothetical ...    26   7.0  
AF024491-3|AAB70311.2|  420|Caenorhabditis elegans Hypothetical ...    26   7.0  

>U80847-7|AAO91744.1|  778|Caenorhabditis elegans Hypothetical
           protein C17H11.6c protein.
          Length = 778

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 116 KISTSPTHRGCDLERDN 166
           K+S+S  HRGC +ERD+
Sbjct: 594 KLSSSSIHRGCVIERDD 610


>U80847-6|AAK68190.1|  796|Caenorhabditis elegans Hypothetical
           protein C17H11.6b protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 116 KISTSPTHRGCDLERDN 166
           K+S+S  HRGC +ERD+
Sbjct: 597 KLSSSSIHRGCVIERDD 613


>U80847-5|AAK68189.1|  793|Caenorhabditis elegans Hypothetical
           protein C17H11.6a protein.
          Length = 793

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 116 KISTSPTHRGCDLERDN 166
           K+S+S  HRGC +ERD+
Sbjct: 594 KLSSSSIHRGCVIERDD 610


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 198  ILDVTPFQCLISNNGLVSPNCCVIIP-SKIIICLI 299
            + D TPF C +  NG  + + C  +P  K  IC +
Sbjct: 1907 LADGTPFSCTVLTNGCPATHYCSTMPGQKKGICCV 1941


>AF024491-4|AAZ82855.1|  365|Caenorhabditis elegans Hypothetical
           protein C24A1.2b protein.
          Length = 365

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 42  IPEECSGGCSSQRSMEHPRRFFAHTKFLLRPLTEAA 149
           +  EC   C S  S + P+      K +L+P T A+
Sbjct: 327 VASECDSSCESADSCDSPKISPISLKLMLQPATSAS 362


>AF024491-3|AAB70311.2|  420|Caenorhabditis elegans Hypothetical
           protein C24A1.2a protein.
          Length = 420

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 42  IPEECSGGCSSQRSMEHPRRFFAHTKFLLRPLTEAA 149
           +  EC   C S  S + P+      K +L+P T A+
Sbjct: 382 VASECDSSCESADSCDSPKISPISLKLMLQPATSAS 417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,866,196
Number of Sequences: 27780
Number of extensions: 142681
Number of successful extensions: 324
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)