Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0975
         (364 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52170.1 68418.m06476 homeobox-leucine zipper family protein ...    27   4.9  
At1g43570.1 68414.m05001 hypothetical protein                          26   8.6  

>At5g52170.1 68418.m06476 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           Anthocyaninless2 (ANL2) (GP:5702094) [Arabidopsis
           thaliana];  contains Pfam PF00046: Homeobox domain and
           Pfam PF01852: START domain
          Length = 682

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 42  IPEECSGGCSSQRSMEHPRRFFAHTKFLLRPLTEAAI*NGTT 167
           I ++   GCS    +EH     +HT  L +PL  +++  G T
Sbjct: 373 IIQDIGNGCSKVTWIEHSEYEESHTHSLYQPLLSSSVGLGAT 414


>At1g43570.1 68414.m05001 hypothetical protein
          Length = 348

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 248 HEPIIRDQTLERCYVQNIPTYXLAHLWRCPVLNRSLCEWAK 126
           H+P I D  L +       T+     W+   +   +CEWAK
Sbjct: 242 HQPDIEDIDLWKPSTGYKKTFSTRETWKLIRMAEPVCEWAK 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,365,300
Number of Sequences: 28952
Number of extensions: 131702
Number of successful extensions: 228
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)