Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0974
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.092
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    27   2.0  
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    27   3.5  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.9 bits (69), Expect = 0.092
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 267  PTAGHRPSPMPST*CGPPPSASNDFPPCALSRQSTWLEDAPRSLYPSVASIR-GLSSPTT 443
            P+ G  P P PST   P P+ S   PP  +         AP S  PSV++ R  + SP +
Sbjct: 1203 PSVGVPPVPPPST-APPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHS 1261

Query: 444  NS 449
            N+
Sbjct: 1262 NA 1263



 Score = 29.5 bits (63), Expect = 0.49
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +3

Query: 267  PTAGHRPSPMPST*CGPPPSASNDFPPCALSRQSTWLEDAPRSLYPSVASIRGLSSPTTN 446
            P+AG  P P+P+    P P+ S++ P  +  R S     +  S  P+ +S+   ++P   
Sbjct: 1222 PSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSMAS-AAPART 1280

Query: 447  SV 452
            SV
Sbjct: 1281 SV 1282



 Score = 26.2 bits (55), Expect = 4.6
 Identities = 19/62 (30%), Positives = 24/62 (38%)
 Frame = +3

Query: 267  PTAGHRPSPMPST*CGPPPSASNDFPPCALSRQSTWLEDAPRSLYPSVASIRGLSSPTTN 446
            P +   P P PS    P P  +   PP             PRS  PS  S     SPT++
Sbjct: 1212 PPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHS-NASPSPTSS 1270

Query: 447  SV 452
            S+
Sbjct: 1271 SM 1272


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +3

Query: 246 HHHSLYLPTAGHRPSPMPST*CGPPPSASNDFPPCALSRQSTWLEDAPRSLYP 404
           H H L+     +      ST C  PP A+  +   AL   + W+     S YP
Sbjct: 85  HSHGLFQKFTPYMDGVPQSTQCEIPPGATFYYNYTALQNGTYWVHSHDMSQYP 137


>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
 Frame = -3

Query: 381 PPTRWTDDLVRTAGSRWMRKAEDRIMWKALGKAYVQQWADK---GYDDDTS--YNAFH 223
           P   W DD+  T  + W RK  D I  +      V +W  K   G  +D S  Y A H
Sbjct: 496 PRREWGDDIPTTKEAFWYRKLFDEIFPRQCADT-VMRWVPKAEWGCPEDPSGRYQAGH 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,553
Number of Sequences: 5004
Number of extensions: 61007
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)