Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0974
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1103 - 8744873-8745724 33 0.29
02_04_0468 - 23172561-23174201 29 2.7
10_01_0313 + 3447065-3448204 29 3.6
06_01_0135 + 1039018-1041474 29 4.8
03_06_0613 - 35090377-35090478,35090686-35090839,35090925-350910... 29 4.8
10_08_0410 - 17716370-17716743,17716839-17716939,17717104-177173... 28 6.3
10_01_0026 - 351737-353443 28 6.3
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262... 28 6.3
04_04_1375 + 33040329-33040854,33041611-33041838,33041984-330420... 28 6.3
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000... 28 6.3
09_04_0032 - 13953323-13955269 28 8.3
03_02_0164 - 6066744-6067637 28 8.3
02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453... 28 8.3
>01_01_1103 - 8744873-8745724
Length = 283
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 219 FSETHYMRYHHHSLYLPTAGHRPSPMPST*CGPPPSASND 338
FS+ H+ YH +L ++GHR SP P G PP+ + +
Sbjct: 123 FSDHHHYYYHDAALASSSSGHRRSPPPCR--GMPPTVAGE 160
>02_04_0468 - 23172561-23174201
Length = 546
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 399 TRSVGRPPTRWTDDLVRTAGSRWMR 325
T ++GR P W DD RWMR
Sbjct: 409 TYAIGRDPASWGDDAAAFRPERWMR 433
>10_01_0313 + 3447065-3448204
Length = 379
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 222 SETHYMRYHHHSLYLPTAGHRPSPMP 299
SE + +HHH LP+ PSP P
Sbjct: 2 SEKETLHHHHHRRRLPSTAPSPSPSP 27
>06_01_0135 + 1039018-1041474
Length = 818
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 466 ILKSLTELVVGEESPRMEAT-DGYKERGASSNQV 368
+LK +V GEE R+EAT DGYK + S + +
Sbjct: 222 MLKGCRYIVTGEEDARVEATADGYKLKEDSKSSL 255
>03_06_0613 -
35090377-35090478,35090686-35090839,35090925-35091004,
35091191-35091340,35091920-35092045,35096500-35096916
Length = 342
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 347 RREV-VGCGRRRTALCGRHWGRPMSSSGQIKAMM 249
RR + GC + + +L G W +P+ SSG+IK ++
Sbjct: 292 RRHIRTGCAKGQESLVG--WAKPLLSSGEIKQLV 323
>10_08_0410 -
17716370-17716743,17716839-17716939,17717104-17717300,
17717392-17717677,17717768-17718004,17718226-17718281,
17720042-17721226
Length = 811
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 243 YHHHSLYLPTAGHRPSPMPST*CGPPPSASND 338
+HHH +LP H +P P PPP A +
Sbjct: 16 HHHHHAHLPALPHLAAPPPP----PPPPAETE 43
>10_01_0026 - 351737-353443
Length = 568
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 267 PTAGHRPSPMPST*CGPPPSASNDFPPCALSRQSTWLEDAPRS 395
P++ SP P + PPP AS + PP + S+ + P S
Sbjct: 22 PSSSLSKSPSPPSPSSPPPPASTNAPPKSAGGVSSSTQAQPSS 64
>07_03_1626 +
28223967-28225294,28225506-28225779,28225939-28226230,
28226492-28226651,28226809-28226917,28227004-28227099
Length = 752
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -3
Query: 390 VGRPPTRWTDDLVRTAGSRWMRKAEDRIMWKALG 289
VG WTD+ +T S+ M +D + W G
Sbjct: 719 VGEMEMVWTDEPSKTRSSKTMNSKDDSVRWPEFG 752
>04_04_1375 +
33040329-33040854,33041611-33041838,33041984-33042081,
33042406-33042450,33042678-33042846,33042917-33043026,
33043983-33044051,33044085-33044158,33044738-33044804,
33044876-33044988,33045148-33045237,33046030-33046144,
33046230-33046388
Length = 620
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 342 PPCALSRQSTWLEDAPRSLYPSVASIRGLSSPTTNSV 452
PP A R ++ + D PRS P R ++ T +SV
Sbjct: 79 PPVAADRSASVVADTPRSFVPCSLRNRAIAGDTPDSV 115
>03_06_0614 -
35099225-35099461,35099545-35099694,35099919-35100066,
35100152-35100231,35100428-35100594,35100692-35100940,
35101025-35102310,35102423-35102544,35102946-35103272
Length = 921
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 347 RREV-VGCGRRRTALCGRHWGRPMSSSGQIKAMM 249
RR + GC + + +L G W +P+ SSG+IK ++
Sbjct: 776 RRPIRTGCSKGQESLVG--WAKPLLSSGEIKQLV 807
>09_04_0032 - 13953323-13955269
Length = 648
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 270 TAGHRPSPMPST*CGPPPSASNDFPPCALS 359
T+ PSP PS PPP+AS D LS
Sbjct: 234 TSPPSPSPSPSPPIPPPPAASQDSKSSKLS 263
>03_02_0164 - 6066744-6067637
Length = 297
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +3
Query: 264 LPTAGHRPSPMPST*CGPPPSASNDFPPCALSRQSTWLEDAPRSLYPSVASIRGLSS 434
LP RP PM + PP + + P A+S S + D PR+ VAS SS
Sbjct: 217 LPAGLWRPGPMAA-----PPLLAGERRPVAVSTSSVFRGDEPRASASLVASQTASSS 268
>02_04_0005 -
18843061-18843201,18843309-18843440,18844457-18845315,
18845884-18845973,18846748-18846869,18846950-18847049,
18847151-18847205,18847275-18847365,18847453-18847572,
18847681-18847780,18847890-18848018,18848099-18848201,
18848670-18848743,18848848-18848933,18849297-18849358,
18849454-18849541,18849937-18850029
Length = 814
Score = 27.9 bits (59), Expect = 8.3
Identities = 27/71 (38%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +3
Query: 243 YHHHSLYLPTAGHRPSPMPST*CG-PPPSASNDFPPCALSRQSTWLEDAPRSLY-PSVAS 416
+H LY H PSP PS+ CG P A W DAP LY PS +S
Sbjct: 446 FHTPCLYASIYLHHPSPSPSS-CGRRRPHRVKTATDRAGGGNPEW--DAPLRLYLPSSSS 502
Query: 417 IRGLSSPTTNS 449
SSP T+S
Sbjct: 503 ----SSPATSS 509
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,259,753
Number of Sequences: 37544
Number of extensions: 404783
Number of successful extensions: 1429
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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