Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0974
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    44   1e-04
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    43   2e-04
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    43   2e-04
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    42   4e-04
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    42   4e-04
Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical pr...    35   0.049
Z81128-9|CAC42344.1|  239|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z78415-10|CAB01676.2|  341|Caenorhabditis elegans Hypothetical p...    29   3.2  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    29   3.2  
AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical ...    27   9.9  
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
 Frame = -3

Query: 438 WGRKVLEWRPRMGTRSVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMWKALGK 286
           W   + +W PR   R VGRPP RW D L +   +R         W  +A+DR  WKA+ +
Sbjct: 137 WTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTRDAFGQVKQLWSTQAKDRKAWKAVIR 196

Query: 285 AYVQQWAD 262
           A  ++  D
Sbjct: 197 AAGEERID 204


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
 Frame = -3

Query: 438  WGRKVLEWRPRMGTRSVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMWKAL 292
            W   + EWRP    R VGRPP RWTD L +   +R         W   A+DR  W A+
Sbjct: 1001 WTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQWLAV 1058


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
 Frame = -3

Query: 438 WGRKVLEWRPRMGTRSVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMWKAL 292
           W   + EWRP    R VGRPP RWTD L +   +R         W   A+DR  W A+
Sbjct: 740 WTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQWLAV 797


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
 Frame = -3

Query: 438 WGRKVLEWRPRMGTRSVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMWKAL 292
           W   + EWRP    R VGRPP RWTD L +   +R         W   A+DR  W A+
Sbjct: 826 WTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKEWLAV 883


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
 Frame = -3

Query: 438 WGRKVLEWRPRMGTRSVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMWKAL 292
           W   + EWRP    R VGRPP RWTD L +   +R         W   A+DR  W A+
Sbjct: 352 WTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKEWLAV 409


>Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical
           protein C07A9.10 protein.
          Length = 254

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
 Frame = -3

Query: 396 RSVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMWKAL 292
           R VG+PP RWTD L +   +R         W  +A+DR  WKA+
Sbjct: 15  RPVGKPPMRWTDSLRKEITTRDMGNNIITPWSTQAKDRKAWKAV 58


>Z81128-9|CAC42344.1|  239|Caenorhabditis elegans Hypothetical
           protein T23D8.9b protein.
          Length = 239

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +3

Query: 264 LPTAGHRPSPMPS-T*CGPPPSASNDFPPCALS--RQSTWLEDAPRSLYPSVASIRGLSS 434
           LPT  + P   P+     PPPS      P ALS  +Q    +   R LY S +  RG ++
Sbjct: 42  LPTPPYHPQQHPNYISMQPPPSQQQQMTPQALSTQQQQQVQQQQQRQLYSSPSPSRGPAA 101

Query: 435 PTTN 446
           P  N
Sbjct: 102 PAQN 105


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +3

Query: 264 LPTAGHRPSPMPS-T*CGPPPSASNDFPPCALS--RQSTWLEDAPRSLYPSVASIRGLSS 434
           LPT  + P   P+     PPPS      P ALS  +Q    +   R LY S +  RG ++
Sbjct: 42  LPTPPYHPQQHPNYISMQPPPSQQQQMTPQALSTQQQQQVQQQQQRQLYSSPSPSRGPAA 101

Query: 435 PTTN 446
           P  N
Sbjct: 102 PAQN 105


>Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical
           protein B0285.1 protein.
          Length = 730

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 231 HYMRYHHHSLYLPTAGHRPSPMPST*CGPPPSASN 335
           H+  +HH S   P+ GH P P P     PP  AS+
Sbjct: 681 HHHSHHHASSLPPSGGHAPPPPP-----PPTQASS 710


>Z78415-10|CAB01676.2|  341|Caenorhabditis elegans Hypothetical
           protein C17G1.7 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 334 LDAEGGGPHYVEGIGEGLCPAV 269
           L     GPH ++GIG G  PAV
Sbjct: 215 LSGRPAGPHKIQGIGAGFAPAV 236


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 264 LPTAGHRPSPMPST*CGPPPSASNDFPP 347
           +P A   P PMP   C PPP     F P
Sbjct: 39  MPCAAPMPMPMPMPVCPPPPPCPAQFCP 66


>AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical
           protein Y46G5A.1b protein.
          Length = 1021

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +3

Query: 213 ILFSETHYMRYHHHSLYLPTAGHRPSPMPST*CGPPPS 326
           IL+   H  R HHH    P+   RP P       PPP+
Sbjct: 82  ILYERVHTERRHHHQTSSPSQYPRP-PSRDRESQPPPT 118


>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
           protein Y46G5A.1a protein.
          Length = 1085

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +3

Query: 213 ILFSETHYMRYHHHSLYLPTAGHRPSPMPST*CGPPPS 326
           IL+   H  R HHH    P+   RP P       PPP+
Sbjct: 82  ILYERVHTERRHHHQTSSPSQYPRP-PSRDRESQPPPT 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,079,771
Number of Sequences: 27780
Number of extensions: 351982
Number of successful extensions: 1017
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)