Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0974
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                24   1.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.6  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 213 ILFSETHYMRYHHHSL-YLPTAGHRP 287
           +LF +  +   H H++ YL   GHRP
Sbjct: 247 MLFRKLPFAGLHSHTIIYLSAKGHRP 272


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 33  RASLASLNYFFNTVHIVLNYILYSVFVFNKHDISQLY 143
           +  + +L   FNT+HI+ +     +F  N  D  +LY
Sbjct: 3   KMQILTLGVLFNTLHIIYSVAGLKIFEANP-DTKRLY 38


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +3

Query: 249 HHSLYLPTAGHRPSPMPST*CGPPPSASNDFPP 347
           H S   P  G  P+P      GPPP      PP
Sbjct: 28  HQSPQAPQRGSPPNPSQ----GPPPGGPPGAPP 56


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 606 VEMYLP-LAFTLCCTIYFLLCYVFV 677
           V   LP +++     IY ++C+VFV
Sbjct: 291 VRSSLPRISYVKAIDIYLVMCFVFV 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,994
Number of Sequences: 438
Number of extensions: 4920
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)