Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0974
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ b...    33   0.24 
At4g34440.1 68417.m04894 protein kinase family protein contains ...    30   1.3  
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    30   1.3  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    30   1.3  
At5g18910.1 68418.m02246 protein kinase family protein contains ...    29   3.0  
At1g33250.1 68414.m04110 fringe-related protein + weak similarit...    29   3.0  
At4g31510.1 68417.m04475 expressed protein low similarity to MTD...    29   4.0  
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    29   4.0  
At1g26110.1 68414.m03186 expressed protein                             29   4.0  
At1g67900.2 68414.m07754 phototropic-responsive NPH3 family prot...    28   5.2  
At1g67900.1 68414.m07753 phototropic-responsive NPH3 family prot...    28   5.2  
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)                28   6.9  
At5g27890.1 68418.m03347 expressed protein                             28   6.9  
At1g36675.1 68414.m04563 glycine-rich protein                          28   6.9  
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex...    27   9.2  

>At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ
           boundaries domain protein 18 (LBD18) identical to LOB
           DOMAIN 18 [Arabidopsis thaliana] GI:17227164; supported
           by full-length cDNA gi:17227163
          Length = 262

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = +3

Query: 216 LFSETHYMRYHHHSLYLPTAGHRPSPMPST----*CGPPPSASNDFPPCALSRQSTW 374
           L +E  Y++ H  SL LP    RP PMP         PPP A  D P       ST+
Sbjct: 127 LQAEVSYLQAHLASLELPQPQTRPQPMPQPQPLFFTPPPPLAITDLPASVSPLPSTY 183


>At4g34440.1 68417.m04894 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 670

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 288 SPMPST*CGPPPSASNDF-PPCALSRQSTWLEDAPRSLYPSVAS 416
           SP PS+   PPP  S  F PP A   Q T    +P S  P VA+
Sbjct: 38  SPPPSSISAPPPDISASFSPPPAPPTQETSPPTSPSSSPPVVAN 81


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +3

Query: 285 PSPMPST*CGPPPSASNDFPPCALSRQSTWLEDAPRSLYPSVASIR 422
           PSP PS+  G  P A +  PP   +   T   D PR   P  AS+R
Sbjct: 196 PSPRPSSPRGASPQAISSKPPSPRAEPPTL--DTPRPPSPRAASLR 239


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +3

Query: 285 PSPMPST*CGPPPSASNDFPPCALSRQSTWLEDAPRSLYPSVASIR 422
           PSP PS+  G  P A +  PP   +   T   D PR   P  AS+R
Sbjct: 195 PSPRPSSPRGASPQAISSKPPSPRAEPPTL--DTPRPPSPRAASLR 238


>At5g18910.1 68418.m02246 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 511

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 222 SETHYMRYHHHSLYLPTAGH 281
           SETH+  +HHHS   P  GH
Sbjct: 97  SETHHHHHHHHSSGGPNNGH 116


>At1g33250.1 68414.m04110 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 548

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/56 (39%), Positives = 27/56 (48%)
 Frame = +3

Query: 279 HRPSPMPST*CGPPPSASNDFPPCALSRQSTWLEDAPRSLYPSVASIRGLSSPTTN 446
           HRP   P +   PPP       PC LSR +T L      L  SVA +  + SPTT+
Sbjct: 21  HRPCSSPIS--RPPPRIR----PCRLSRFATALVATSALLLASVAWLSLVFSPTTS 70


>At4g31510.1 68417.m04475 expressed protein low similarity to MTD1
           [Medicago truncatula] GI:9294810
          Length = 214

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/74 (27%), Positives = 27/74 (36%)
 Frame = +3

Query: 264 LPTAGHRPSPMPST*CGPPPSASNDFPPCALSRQSTWLEDAPRSLYPSVASIRGLSSPTT 443
           L   G  P P  S+  G       D      S Q  WL     SL  S+   RGLS+   
Sbjct: 32  LRRCGRSPPPESSSSVGETSENEEDEDDAVSSSQGRWLNSFSSSLEDSLPIKRGLSNHYI 91

Query: 444 NSVRLFNIIINISD 485
              + F  ++  S+
Sbjct: 92  GKSKSFGNLMEASN 105


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -1

Query: 335 VGCGRRRTALCGRHWGRPMSSSGQIKAMMMIPHIMRFTEQNK 210
           V   RRR  L  + W +P   +  +++  ++  ++RF EQ +
Sbjct: 790 VNSKRRRLQLANQLWSKPNDITHAVESAAVVAKLVRFVEQGR 831


>At1g26110.1 68414.m03186 expressed protein
          Length = 611

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +3

Query: 252 HSLYLPTAGHRPSPMPST*CGPPPSASNDFPPCALSRQSTWLEDAPRSLYPSVASIRGLS 431
           H L +P +  +P   P+    PPP+ S+       S Q + L +AP SL+P   S + L+
Sbjct: 197 HGLPMPNSLQQPLQYPNFNTPPPPTGSS-------SLQGSSLPEAPSSLFPFSTSSQMLA 249


>At1g67900.2 68414.m07754 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 631

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
 Frame = -3

Query: 441 WWGRKVLE------WRPRMGTRSVGRPPTRWTDDLVRTAGSRWM 328
           WW   + E      WR  +  +S G+ P     D +R   S+W+
Sbjct: 201 WWAEDIAELGIDLYWRTMIAIKSGGKVPASLIGDALRVYASKWL 244


>At1g67900.1 68414.m07753 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 631

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
 Frame = -3

Query: 441 WWGRKVLE------WRPRMGTRSVGRPPTRWTDDLVRTAGSRWM 328
           WW   + E      WR  +  +S G+ P     D +R   S+W+
Sbjct: 201 WWAEDIAELGIDLYWRTMIAIKSGGKVPASLIGDALRVYASKWL 244


>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
          Length = 130

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +3

Query: 285 PSPMPST*CGPPPSASNDFPPCALSRQSTW----LEDAPRSLYPSVASIRGLSSPTTN 446
           P+P P+T   PPP A+   PP A    +T     +  AP S  PS A      +PT +
Sbjct: 24  PAPSPTTTVTPPPVATP--PPAATPAPTTTPPPAVSPAPTSSPPSSAPSPSSDAPTAS 79


>At5g27890.1 68418.m03347 expressed protein
          Length = 399

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 363 DDLVRTAGSRWMRKAEDRIMWKALGKAYVQQWADKGYDDDTSY 235
           DD +RTA S W R  +D  ++KA      +   DK   D++ +
Sbjct: 279 DDALRTARSEWSRFKDDVAIYKARIDRLKKHMLDKRVADESLF 321


>At1g36675.1 68414.m04563 glycine-rich protein 
          Length = 268

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 418 MEATDGY-KERGASSNQVD*RLSAHGGKSLDAEGGGPHYVEGIGEG 284
           + ++D Y  +R  ++ + D R +  GG S D  GGG     GIG G
Sbjct: 176 LSSSDNYFTKRFEATKKEDGRGNGRGGGSRDGRGGGSGDGRGIGGG 221


>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
           extensin family protein (LRX1) similar to extensin-like
           protein [Lycopersicon esculentum]
           gi|5917664|gb|AAD55979; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 744

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 288 SPMPST*C--GPPPSASNDF-PPCALSRQSTWLEDAPRSLYPSVASIRGLSSP 437
           SP P+  C  G PP A+  + PP   S  S+    +P S +P + S+   +SP
Sbjct: 685 SPPPTKACKEGHPPQATPSYEPPPEYSYSSSPPPPSPTSYFPPMPSVSYDASP 737


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,816,627
Number of Sequences: 28952
Number of extensions: 317111
Number of successful extensions: 1023
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)