Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0973
         (653 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2FQD3 Cluster: Putative uncharacterized protein; n=1; ...    35   2.0  
UniRef50_Q8IKH9 Cluster: Dynein beta chain, putative; n=2; Eukar...    34   2.6  
UniRef50_Q9U2L6 Cluster: Putative uncharacterized protein sre-16...    33   4.5  
UniRef50_A4VD43 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  
UniRef50_Q6GV27 Cluster: PMP22 claudin domain-containing protein...    33   7.9  
UniRef50_Q22DA0 Cluster: EF hand family protein; n=1; Tetrahymen...    33   7.9  

>UniRef50_Q2FQD3 Cluster: Putative uncharacterized protein; n=1;
           Methanospirillum hungatei JF-1|Rep: Putative
           uncharacterized protein - Methanospirillum hungatei
           (strain JF-1 / DSM 864)
          Length = 398

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 363 NKSINACNYLLLINIF*YYRKCLWIVKCVGLGENE 467
           NK IN   +L+L   F +Y+ C+ I+K + + ENE
Sbjct: 64  NKKINTFLFLILCQTFLFYKDCIKILKKISINENE 98


>UniRef50_Q8IKH9 Cluster: Dynein beta chain, putative; n=2;
            Eukaryota|Rep: Dynein beta chain, putative - Plasmodium
            falciparum (isolate 3D7)
          Length = 6473

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 456  LSLHILLSINIYDNIKIYLLTINNCMHLWIYFMNSLKHYVFFCSDRQLNIIQYLFIVK 283
            + L +L  I I++N K++L++  NC HL   F       VF  +   L+ I    I+K
Sbjct: 5099 IKLQLLNDIQIHENFKLFLVSNKNCFHLDPVFYTLTTVIVFSLNKEALDNIMLNVIIK 5156


>UniRef50_Q9U2L6 Cluster: Putative uncharacterized protein sre-16;
           n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein sre-16 - Caenorhabditis elegans
          Length = 337

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 444 ILLSINIYDNIKIYLLTINNCMHLWIYFMNSLKHYVFFCSDRQLNIIQYLFIV 286
           +LLSI  Y+N   Y L I N + +  Y  N+       C  R ++I+ +   V
Sbjct: 2   VLLSIEFYENASYYFLIILNAISILYYIFNTTISIKAGCFKRNIHILHHAIYV 54


>UniRef50_A4VD43 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 235

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 20/50 (40%), Positives = 26/50 (52%)
 Frame = -3

Query: 498 IVSKPINIIRFHFPLSLHILLSINIYDNIKIYLLTINNCMHLWIYFMNSL 349
           I+ K INII  HF   LH   +  I   IKI    I  C+H++  F+N L
Sbjct: 150 IIIKLINIIGLHFYRFLHQQDAFIIVFQIKITQSQILYCLHIFAIFLNYL 199


>UniRef50_Q6GV27 Cluster: PMP22 claudin domain-containing protein;
           n=2; Murinae|Rep: PMP22 claudin domain-containing
           protein - Rattus norvegicus (Rat)
          Length = 231

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
 Frame = -3

Query: 483 INIIRFHFPLSLHILLSINIYDNIKI-YLLTINNCMHLWI----YFMNSLKHYVFFCSDR 319
           +  IR    +SL+I + +N+   ++  Y+++ N C+HL I    +F   L  Y       
Sbjct: 63  LEAIRRMMMMSLNISIYLNLIIGLQFTYMISQNKCVHLLIGFLSFFTGCLLFYAIIVYHH 122

Query: 318 QLNIIQYLFIV 286
           +LN  QY++ V
Sbjct: 123 KLNKGQYVYFV 133


>UniRef50_Q22DA0 Cluster: EF hand family protein; n=1; Tetrahymena
            thermophila SB210|Rep: EF hand family protein -
            Tetrahymena thermophila SB210
          Length = 2860

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 539  DXLSKGFFLAHFWSTYLHLCLIHLRLFKLNVSVLPK 646
            D   KGFF   +W  YL++ ++   L+ +N  +LPK
Sbjct: 1950 DSSQKGFFT--YWDLYLNIVILEFTLYPVNTLILPK 1983


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 461,709,197
Number of Sequences: 1657284
Number of extensions: 7317075
Number of successful extensions: 14773
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14760
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)