Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0973
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    27   1.8  
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    27   2.4  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   3.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   4.1  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   7.2  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   7.2  
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    25   9.5  

>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/30 (46%), Positives = 23/30 (76%)
 Frame = -3

Query: 492 SKPINIIRFHFPLSLHILLSINIYDNIKIY 403
           +K I+ +RF FP+S H+LLS ++ + IKI+
Sbjct: 266 TKGISCLRF-FPISGHLLLSGSMDNQIKIW 294


>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 426 IYDNIKIYLLTINNCMHLWIYFMNSLKHYVFFCSD 322
           IY +I      +   M L  Y   S KH+VFFC +
Sbjct: 156 IYAHIYCSHFHVMVAMELESYLNTSFKHFVFFCRE 190


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 217 ICVRIARYNLIHYFYYIPLYRTLIKCLQIMYK 122
           + + +A YN   YF+Y   Y ++   L++M +
Sbjct: 748 VVISLAAYNQFRYFHYGSAYLSMSAALEVMIR 779


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +2

Query: 572 FWSTYLHLCLIHL--RLFKLNVSVL 640
           F S YLH+C++HL   L K NV +L
Sbjct: 288 FVSNYLHVCMLHLLNLLKKENVKML 312


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = -3

Query: 447 HILLSINIYDNI---KIYLLTINNCMHLWIYFMNSLKHYVFFCSDRQLNIIQY 298
           HI+L I  Y  +   ++Y L  + C++   + ++ +K ++FFC   +L ++ Y
Sbjct: 79  HIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFC---RLKLLDY 128


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
 Frame = -3

Query: 432 INIYDNIKIYLLTINNCMHLWIYFMNSL---------KHYVFFCSDRQLNI 307
           +N+  ++  + LT+NN    WI+ + SL         K ++   SD QLN+
Sbjct: 177 LNLLLSLMFFFLTLNNTDKTWIHSIRSLNPPVLPTLVKLFIDITSDYQLNL 227


>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 315 IADHCKKIHNVSRNS*NKSINACNYLLLINIF*YYRKCLWIVKCVGL 455
           I DH   + ++  +S   S++A  Y    +   YYR CL  + C+ L
Sbjct: 146 IIDHIDYVESLIHSS-YYSVSADYYKAKADYAQYYRHCLLYLSCIDL 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,597
Number of Sequences: 5004
Number of extensions: 35569
Number of successful extensions: 80
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)