Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0973
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671...    30   1.4  
04_04_1042 - 30346132-30346285,30346629-30346759,30346867-303469...    29   4.3  
01_06_1769 - 39774042-39774566,39775448-39775498,39776371-39776604     28   7.5  

>02_02_0095 +
           6716327-6716335,6717302-6717451,6717523-6717583,
           6717646-6717725,6717802-6717903,6717982-6718471,
           6718796-6719171,6720320-6720379,6720887-6721056,
           6721287-6721340,6721384-6721523,6722362-6722511,
           6722582-6722642,6722705-6722784,6722933-6723034,
           6723111-6723612,6724401-6724776,6725419-6725493,
           6726058-6726198,6726264-6726282
          Length = 1065

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = -3

Query: 408 IYLLTINNCMHLWIYFMNSLKHYVFFCSDRQLNIIQYLF 292
           ++  + +NC    + + +S+KH VFFC+ R ++++ + F
Sbjct: 532 VFFFSFSNCSICGLLYESSVKHIVFFCTIR-VDLVLHTF 569


>04_04_1042 -
           30346132-30346285,30346629-30346759,30346867-30346938,
           30347284-30347370,30347479-30347505,30347777-30347869,
           30348470-30348558,30348649-30348727,30349102-30349231,
           30349344-30349464,30349619-30349726,30349837-30350152
          Length = 468

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -3

Query: 540 SCWRFLFIP*TLLPIVSKPINIIRFHFPLSLHILLSINIYDNIKIYLLTINN 385
           SC  F  +   +LP++SK    + +H  L   ILL + +      YLL  N+
Sbjct: 54  SCNLFQLVLFEILPVLSKHARFLNWHLDLFCLILLLVFVLPYYHCYLLLRNS 105


>01_06_1769 - 39774042-39774566,39775448-39775498,39776371-39776604
          Length = 269

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 7/32 (21%), Positives = 23/32 (71%)
 Frame = -3

Query: 402 LLTINNCMHLWIYFMNSLKHYVFFCSDRQLNI 307
           LL  +   +++++ +N ++ YV++C D+++++
Sbjct: 79  LLKYDLYFYIFVHILNKVRGYVYYCPDKKVSL 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,463,999
Number of Sequences: 37544
Number of extensions: 173298
Number of successful extensions: 328
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)