Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0973
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical ...    33   0.13 
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    28   5.0  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    28   5.0  
Z77658-9|CAE17786.2|  201|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical
           protein Y39C12A.5 protein.
          Length = 337

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 444 ILLSINIYDNIKIYLLTINNCMHLWIYFMNSLKHYVFFCSDRQLNIIQYLFIV 286
           +LLSI  Y+N   Y L I N + +  Y  N+       C  R ++I+ +   V
Sbjct: 2   VLLSIEFYENASYYFLIILNAISILYYIFNTTISIKAGCFKRNIHILHHAIYV 54


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 472  PFSFSPKPTHFTIHKHLR*Y*NIFINNK*LHAFMDLFHEFLETLCIF 332
            PF  +  PTHF + KHL     + I+ +   AF    H F+ +  +F
Sbjct: 1170 PFCAANTPTHFDLQKHLIQEHVVQISGQACCAFCQEHHRFMSSHILF 1216


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 472  PFSFSPKPTHFTIHKHLR*Y*NIFINNK*LHAFMDLFHEFLETLCIF 332
            PF  +  PTHF + KHL     + I+ +   AF    H F+ +  +F
Sbjct: 1170 PFCAANTPTHFDLQKHLIQEHVVQISGQACCAFCQEHHRFMSSHILF 1216


>Z77658-9|CAE17786.2|  201|Caenorhabditis elegans Hypothetical
           protein F14D7.9 protein.
          Length = 201

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = -3

Query: 465 HFPLSLHILL----SINIYDNIKIYLLTINNCMHLWIYFMNSLKHYVFFCSDRQLNII 304
           HF  S+HI      +INI+    +Y+   +N + L + F  SL   +FF +    ++I
Sbjct: 91  HFATSMHITNGDFDAINIWTQTSLYVDYCSNFLSLSVIFFLSLNRCLFFVAKNWNSLI 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,188,108
Number of Sequences: 27780
Number of extensions: 191583
Number of successful extensions: 420
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)