Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0973
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.9  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   7.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.9  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 447 HILLSINIYDNIKIYLLTINNCMHLWIY 364
           HI L+I IY  + I  L + NC  +WI+
Sbjct: 57  HIGLAI-IYSMLLIMSL-VGNCCVIWIF 82


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -1

Query: 617 TIASVLGIDVSKWTKNEPKKNLYL 546
           TIA ++GI+ + ++  E +  +Y+
Sbjct: 18  TIAKIIGINAANFSNFEDRVTMYV 41


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 447 HILLSINIYDNIKIYLLTINNCMHLWIY 364
           HI L+I IY  + I  L + NC  +WI+
Sbjct: 57  HIGLAI-IYSMLLIMSL-VGNCCVIWIF 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,494
Number of Sequences: 438
Number of extensions: 2504
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)