Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0973
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03640.1 68417.m00499 hypothetical protein includes At2g05890...    31   0.51 
At1g64720.1 68414.m07338 expressed protein weak similarity to SP...    28   4.7  
At2g25590.1 68415.m03065 agenet domain-containing protein contai...    28   6.2  

>At4g03640.1 68417.m00499 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 394

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 411 KIYLLTINNCMHLWIYFMNSLKHYVFF 331
           ++ L+T+NN  HL++YFM  L  YV +
Sbjct: 359 QVCLITLNNSNHLYLYFMVVLLKYVLY 385


>At1g64720.1 68414.m07338 expressed protein weak similarity to
           SP|P53809 Phosphatidylcholine transfer protein (PC-TP)
           {Rattus norvegicus}
          Length = 385

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 423 YDNIKIYLLTINNCMHLWIYFMNSLKHYVFFCSDRQ 316
           +D++ +Y  T+  C       +  ++ + FFCSDR+
Sbjct: 164 WDDMLLYSSTLERCKDTGTMVVQWVRKFPFFCSDRE 199


>At2g25590.1 68415.m03065 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 381

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 211 VRIARYNLIHYFYYIPLYRTLIKCLQI 131
           +RIA +   HY +YI LY TL K +++
Sbjct: 325 LRIAMFLCHHYRFYIRLYSTLRKIIEL 351


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,071,357
Number of Sequences: 28952
Number of extensions: 162656
Number of successful extensions: 286
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)