Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0972
         (509 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.6  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    23   1.6  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   2.1  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 243 GGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTY 142
           GG SA++ + +  +LS+       L PS  PP++
Sbjct: 93  GGISASKRQRTDDWLSSPSGNVPPLTPSPGPPSH 126


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 274 QEAEDACSAMNGTEMLGATLKVEISRK 354
           + A D C+  N T++L   LK++I ++
Sbjct: 211 KRASDLCNEANKTKILLVGLKIDIDQE 237


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -3

Query: 261 FYEAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPP 127
           F   KP G  +T T    P LSN    +     ++   + T +PP
Sbjct: 119 FESGKPSGVISTNTSPPSPILSNRFGENEEADAASNVISSTPLPP 163


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,684
Number of Sequences: 336
Number of extensions: 1848
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12154132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)