Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0972
(509 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 38 0.001
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.019
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.23
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 29 0.53
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 0.71
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 28 0.71
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 28 0.71
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 28 0.71
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 27 1.2
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 26 2.9
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 2.9
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 2.9
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 26 3.8
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 26 3.8
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr... 25 8.7
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 37.5 bits (83), Expect = 0.001
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 232 TKSPR-FRFIEFENLQEAEDACSAMNGTEMLGATLKVE 342
+KSP F FI FEN A++A +++NG+ G TLKVE
Sbjct: 62 SKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.5 bits (73), Expect = 0.019
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
R+YVGGL I+ DLE F ++G ++++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNL 34
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.23
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 228 TQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPPE 124
T+ +FPYL NSR+R S + P+ VPPE
Sbjct: 329 TEYRIAFPYLYNSRAR-SVALSEYHQPSNVFVPPE 362
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 28.7 bits (61), Expect = 0.53
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 226 GSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 354
G S F F+EF++ A A AMNG + G L++++S +
Sbjct: 660 GKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQ 702
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 0.71
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +2
Query: 140 VYVGGLVEGIKKEDLEREFDKYGKLNSVW 226
+YVG + + E++ + F KYG++ S++
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 28.3 bits (60), Expect = 0.71
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 214 KLSLGSTKSPR-FRFIEFENLQEAEDACSAMNGTEMLGATLKV 339
++ LG+T R F+ +EN+Q+A AC ++G + L V
Sbjct: 40 QIRLGNTVQTRGTAFVVYENVQDARRACEKLSGYNFMDRYLVV 82
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.3 bits (60), Expect = 0.71
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Frame = +1
Query: 232 TKSPR-FRFIEFENLQEAEDACSAMNG--TEMLGATLKVEISRK 354
T++ R F F+E+E+ ++AEDA ++G E G L+VE +++
Sbjct: 43 TRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWAKQ 86
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 28.3 bits (60), Expect = 0.71
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 116 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
+M T V+VGGL + ++DL+ F +G++ ++
Sbjct: 291 SMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNI 326
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 140 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN 238
+++ L K+ D+EREF +YG + + V N
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRN 134
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 291 RIFRLLQVLKFYEAKPGGFSATQTEFSF 208
R F+LL + F E + G SA+QT+F+F
Sbjct: 70 RYFKLLCSIGFKEIEVGFPSASQTDFAF 97
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 2.9
Identities = 8/34 (23%), Positives = 19/34 (55%)
Frame = +2
Query: 122 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
++ V++G L ++++E F K+GK+ +
Sbjct: 295 TAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHI 328
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 234 SATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVP 130
S+ + +S P SNS + S+ +I S +YT +P
Sbjct: 803 SSMNSSYSSPISSNSVTSSTSIISSIASSSYTSIP 837
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 173 KEDLEREFDKYGKLNSVWVAL 235
KE++E EF+ YGK + V VAL
Sbjct: 435 KEEVEIEFELYGKNDDVNVAL 455
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 143 YVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAS 256
Y G LV+G +K +E D +LNS+ ++P AS
Sbjct: 116 YEGRLVDGTRKMKVEIILDPSRQLNSLAARVSPASNAS 153
>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 24.6 bits (51), Expect = 8.7
Identities = 15/59 (25%), Positives = 24/59 (40%)
Frame = -3
Query: 309 TIHRATRIFRLLQVLKFYEAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRV 133
T+H + R+LQVLK + + +F L N RS + ++ P V
Sbjct: 384 TVHVYSDAMRVLQVLKLFHQHKDSDDPQKFMLAFGRLLNDSQRSEDIYNNSSSPELREV 442
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,644,287
Number of Sequences: 5004
Number of extensions: 30244
Number of successful extensions: 120
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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