Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0972
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   9.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.8  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 173 KEDLEREFDKYGKL 214
           +++ +R F+KYG+L
Sbjct: 182 EQEAKRRFEKYGQL 195


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 24  FLFINVFKISQNR 62
           FL+ N+FK  +NR
Sbjct: 361 FLYYNIFKALRNR 373


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 210 FPYLSNSRSRSSFLIP 163
           FPYL       +FLIP
Sbjct: 7   FPYLCYKNGGGAFLIP 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,492
Number of Sequences: 438
Number of extensions: 1929
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)