Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0972
(509 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 48 3e-06
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 48 3e-06
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 47 6e-06
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 46 1e-05
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 37 0.009
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 37 0.009
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 35 0.028
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 35 0.028
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 34 0.048
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 34 0.048
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 34 0.064
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 34 0.064
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 33 0.084
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 33 0.084
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 33 0.084
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 33 0.084
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 33 0.084
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 33 0.11
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 33 0.11
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 33 0.11
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 33 0.11
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 33 0.15
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 33 0.15
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 33 0.15
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 33 0.15
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 33 0.15
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 33 0.15
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 33 0.15
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 33 0.15
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 33 0.15
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 32 0.20
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 32 0.20
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 32 0.20
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 32 0.26
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 32 0.26
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 31 0.34
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 31 0.34
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 31 0.34
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 31 0.34
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 31 0.34
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 31 0.34
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 31 0.45
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 31 0.45
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 31 0.60
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 30 0.79
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 30 1.0
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 30 1.0
At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,... 30 1.0
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 29 1.4
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 29 1.4
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 29 1.4
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 29 1.4
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 29 1.8
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 29 1.8
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 29 1.8
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 29 1.8
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 1.8
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 29 1.8
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 29 1.8
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 29 1.8
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 29 1.8
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 29 1.8
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 29 1.8
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 29 1.8
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 29 1.8
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 29 1.8
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 29 2.4
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 29 2.4
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 29 2.4
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 29 2.4
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 29 2.4
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 29 2.4
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 28 3.2
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 28 3.2
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 28 3.2
At1g05510.1 68414.m00563 expressed protein 28 3.2
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 28 4.2
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 28 4.2
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 28 4.2
At5g47330.1 68418.m05834 palmitoyl protein thioesterase family p... 28 4.2
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 28 4.2
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 27 5.5
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 27 5.5
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 27 5.5
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 27 5.5
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 27 5.5
At1g60490.1 68414.m06810 phosphatidylinositol 3-kinase (PI3K) id... 27 5.5
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 27 7.3
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 27 7.3
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 27 7.3
At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM dom... 27 7.3
At5g22800.1 68418.m02666 aminoacyl-tRNA synthetase family protei... 27 7.3
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 27 7.3
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 27 7.3
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 27 7.3
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 27 7.3
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 27 7.3
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 27 7.3
At1g73130.1 68414.m08456 expressed protein 27 7.3
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 27 7.3
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 27 7.3
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 27 9.7
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 27 9.7
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 9.7
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 9.7
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 9.7
At4g25110.1 68417.m03612 latex-abundant family protein (AMC2) / ... 27 9.7
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 27 9.7
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s... 27 9.7
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 27 9.7
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 27 9.7
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 48.4 bits (110), Expect = 3e-06
Identities = 21/40 (52%), Positives = 27/40 (67%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA 253
TRVYVG L + + +LE EF +G L +VWVA PPG+A
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYA 41
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 48.4 bits (110), Expect = 3e-06
Identities = 21/40 (52%), Positives = 27/40 (67%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA 253
TRVYVG L + + +LE EF +G L +VWVA PPG+A
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYA 41
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 47.2 bits (107), Expect = 6e-06
Identities = 20/40 (50%), Positives = 27/40 (67%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA 253
+RVYVG L + + +LE EF +G + SVWVA PPG+A
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYA 41
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 46.4 bits (105), Expect = 1e-05
Identities = 20/40 (50%), Positives = 27/40 (67%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA 253
+RVYVG L + + +LE EF +G + SVWVA PPG+A
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYA 41
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 36.7 bits (81), Expect = 0.009
Identities = 18/41 (43%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Frame = +1
Query: 232 TKSPRF-RFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
T + RF RFIE+ ++++AE A A+N +E+ G +K+E+SR
Sbjct: 302 TPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSR 342
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 36.7 bits (81), Expect = 0.009
Identities = 18/41 (43%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Frame = +1
Query: 232 TKSPRF-RFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
T + RF RFIE+ ++++AE A A+N +E+ G +K+E+SR
Sbjct: 315 TPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSR 355
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 35.1 bits (77), Expect = 0.028
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 128 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
G TR+YVG L + DLER F +YG++ V
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDV 40
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
+ F+EF + ++A+DA ++G + G+ + VE SR
Sbjct: 46 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR 80
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 35.1 bits (77), Expect = 0.028
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 128 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
G TR+YVG L + DLER F +YG++ V
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDV 40
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
+ F+EF + ++A+DA ++G + G+ + VE SR
Sbjct: 46 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR 80
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 34.3 bits (75), Expect = 0.048
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 348
+ P + F+EFE+ ++AEDA +G + G L+VE++
Sbjct: 43 RPPCYCFVEFEHSRDAEDAIKGRDGYNLDGCRLRVELA 80
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 140 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 241
+YVG L I++ ++E F KYG++ + + + P
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP 42
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 34.3 bits (75), Expect = 0.048
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 211 TKLSLGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
T + T S +IE+ N +EA A A+N TE+ G L VEI++
Sbjct: 376 TVVDCSITDSKHIAYIEYSNSEEAT-AALALNNTEVFGRALNVEIAK 421
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 33.9 bits (74), Expect = 0.064
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 140 VYVGGLVEGIKKEDLEREFDKYGKL 214
++VGG+ + K+DLE EF K+GK+
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKI 276
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 33.9 bits (74), Expect = 0.064
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 348
+ P + F+EFE+ ++A+DA +G + G L+VEI+
Sbjct: 43 RPPGYAFVEFEDPRDADDAIYGRDGYDFDGCRLRVEIA 80
Score = 30.7 bits (66), Expect = 0.60
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +2
Query: 119 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFA 253
MSS R +YVG L I+K ++E F KYG + + + + PPG+A
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYA 48
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 33.5 bits (73), Expect = 0.084
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 122 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
S GG R++VGGL E + ++DL + F G +++V
Sbjct: 6 SGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAV 39
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 33.5 bits (73), Expect = 0.084
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVE 342
+ IE+E +EA+ A SAMNG E+L + V+
Sbjct: 138 YALIEYEKKEEAQSAISAMNGAELLTQNVSVD 169
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 33.5 bits (73), Expect = 0.084
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 348
+ P + F+EF++ ++AEDA +G + G L+VE++
Sbjct: 43 RPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +2
Query: 119 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSV--WVALNPPGFA 253
MSS +R VYVG L I++ ++E F KYG + + V PPG+A
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYA 48
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 33.5 bits (73), Expect = 0.084
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 348
+ P + F+EF++ ++AEDA +G + G L+VE++
Sbjct: 43 RPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +2
Query: 119 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSV--WVALNPPGFA 253
MSS +R VYVG L I++ ++E F KYG + + V PPG+A
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYA 48
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 33.5 bits (73), Expect = 0.084
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 348
+ P + F+EF++ ++AEDA +G + G L+VE++
Sbjct: 43 RPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +2
Query: 119 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSV--WVALNPPGFA 253
MSS +R VYVG L I++ ++E F KYG + + V PPG+A
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYA 48
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 33.1 bits (72), Expect = 0.11
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 131 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 241
GT +YV GL + +DLE F K GK+ S ++ + P
Sbjct: 71 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEP 107
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 33.1 bits (72), Expect = 0.11
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 131 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 241
GT +YV GL + +DLE F K GK+ S ++ + P
Sbjct: 70 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEP 106
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 33.1 bits (72), Expect = 0.11
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +1
Query: 250 RFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
+F+EF +++ A+ A A+N TE+ G +K+E SR
Sbjct: 261 KFVEFFDVRSADAALKALNRTEIAGKRIKLEHSR 294
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 33.1 bits (72), Expect = 0.11
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 125 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA 253
S G +Y+ L + + E L+ F +YG + S V LNP G +
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMS 371
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 247
T VYV L + I +++L + F K+G ++S V + G
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSG 266
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.7 bits (71), Expect = 0.15
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 131 GTRVYVGGLVEGIKKEDLEREFDKYGKL 214
G+R++VGGL + DLER F ++G +
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDI 33
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 32.7 bits (71), Expect = 0.15
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +2
Query: 119 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFA 253
MSS +R +YVG L I++ ++E F KYG + + + + PPG+A
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYA 48
Score = 32.7 bits (71), Expect = 0.15
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 348
+ P + F+EFE+ ++A+DA +G + G L+VE++
Sbjct: 43 RPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELA 80
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 32.7 bits (71), Expect = 0.15
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +2
Query: 119 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFA 253
MSS +R +YVG L I++ ++E F KYG + + + + PPG+A
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYA 48
Score = 32.7 bits (71), Expect = 0.15
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 348
+ P + F+EFE+ ++A+DA +G + G L+VE++
Sbjct: 43 RPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELA 80
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 32.7 bits (71), Expect = 0.15
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 250 RFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
+F+EF +++ AE A A+N E+ G +KVE SR
Sbjct: 292 KFVEFYDVRGAEAALKALNRCEIAGKRIKVEPSR 325
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 32.7 bits (71), Expect = 0.15
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 250 RFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
+F+EF +++ AE A A+N E+ G +KVE SR
Sbjct: 292 KFVEFYDVRGAEAALKALNRCEIAGKRIKVEPSR 325
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 32.7 bits (71), Expect = 0.15
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 131 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 241
G +YV GL + + DLE F K GK+ V + L+P
Sbjct: 44 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDP 80
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 32.7 bits (71), Expect = 0.15
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 131 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 241
G +YV GL + + DLE F K GK+ V + L+P
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDP 110
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 32.7 bits (71), Expect = 0.15
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
F FI +++ A++A + MNG ++ G LKV++ R
Sbjct: 382 FGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKR 416
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 32.7 bits (71), Expect = 0.15
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
F FI +++ A++A + MNG ++ G LKV++ R
Sbjct: 373 FGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKR 407
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 348
+S F FI FE+ + + A + MNG E+ G L++ ++
Sbjct: 258 RSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.3 bits (70), Expect = 0.20
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKL 214
+R++VGGL + + LE FD+YGK+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKI 38
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.3 bits (70), Expect = 0.20
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKL 214
+R++VGGL + + LE FD+YGK+
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKI 38
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 31.9 bits (69), Expect = 0.26
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
T ++VGGL + EDL++ F+++G++ SV
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSV 333
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 31.9 bits (69), Expect = 0.26
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKL 214
T+V+VGGL + E L R FD+YG +
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDI 50
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 31.5 bits (68), Expect = 0.34
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 247
T VYV L E +DL+ F +YGK+ S V + G
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEG 66
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 226 GSTKSPRFRFIEFENLQEAEDACSAMNG 309
G KS F F+ FEN +A A ++NG
Sbjct: 64 GEGKSKGFGFVNFENADDAARAVESLNG 91
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 31.5 bits (68), Expect = 0.34
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 250 RFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
RF+EF ++++A A MNG E+ G + +E SR
Sbjct: 252 RFVEFYDVRDAARAFDRMNGKEIGGKQVVIEFSR 285
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 31.5 bits (68), Expect = 0.34
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 202 IWKTKLSLGSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
+W+ + S S FR EF + ++A+DA ++G + G+ + VE SR
Sbjct: 1 MWENTPCMWSLLSSHFRNQEFGDPRDADDARHYLDGRDFDGSRITVEFSR 50
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 31.5 bits (68), Expect = 0.34
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 348
+S + F+ F +EAE+A + +NG E++G + ++ S
Sbjct: 234 RSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFS 271
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 31.5 bits (68), Expect = 0.34
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 122 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 247
S G R+YVG L + ++DL + F+ +G + V V + G
Sbjct: 281 SGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETG 322
Score = 31.5 bits (68), Expect = 0.34
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 173 KEDLEREFDKYGKLNSVWVALNPPGF 250
KED++ E K+GKLN ++V N GF
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGF 513
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 31.5 bits (68), Expect = 0.34
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
T ++VGGL + EDL++ F ++G++ SV
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSV 335
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 31.1 bits (67), Expect = 0.45
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEI 345
KS F FI+FE+ + AE A AMN ++ LKV +
Sbjct: 99 KSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHMLKVHV 135
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 31.1 bits (67), Expect = 0.45
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 140 VYVGGLVEGIKKEDLEREFDKYGKLNSV 223
V+VG ++ DLER FDKYG+++ V
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRV 31
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 30.7 bits (66), Expect = 0.60
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 354
KS +F FI F + QEA+ A N T + + + VEI+ K
Sbjct: 7 KSRQFGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHK 46
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 30.3 bits (65), Expect = 0.79
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 140 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 241
++VG L +G +EDL++ F G++ V + NP
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNP 249
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
F F+ +++ A++A MNG + G LKV++ R
Sbjct: 392 FGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLKR 426
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 226 GSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVE 342
G+ KS F F+ +E+ + A +NG +LG T+KV+
Sbjct: 72 GTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVD 110
>At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,
putative similar to SP|P07374 Urease (EC 3.5.1.5) (Urea
amidohydrolase) {Canavalia ensiformis}; contains Pfam
profile PF01979: Amidohydrolase family
Length = 838
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 356 GTGPAEVGSEVGAAVTSGVVV--HSEVREEAGSTTHTVAAAAGRTIVT 493
GT PA + + + A + V H++ E+G HT+ A GRTI T
Sbjct: 494 GTTPAAIDNCLAVAEEYDIQVNIHTDTLNESGFVEHTINAFRGRTIHT 541
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +2
Query: 167 IKKEDLEREFDKYGKLNSV 223
+K+ED+E F +YGK+NSV
Sbjct: 127 VKREDVESFFSQYGKVNSV 145
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 241
+VYVG L + + KE LE F + GK+ S V+ P
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVP 212
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKL 214
T+V+VGGL + E L + F++YG++
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEI 50
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 247
T VYV L + I ++L++ F KYG ++S V + G
Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSG 262
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 232 TKSPR-FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 354
T+ P+ F FI FE+ +A+ A A+NG + G + VE +++
Sbjct: 103 TQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAKE 144
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV 229
+++VGGL I +E+ + FD++G + V V
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVV 141
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV 229
+++VGGL I +E+ + FD++G + V V
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVV 141
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 137 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV 229
+++VGGL I +E+ + FD++G + V V
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVV 141
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 140 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 241
V+VG L +KK+ + +EF K+G++ SV + P
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 116 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
TM G + VYVGGL I +E + R F YG + +V
Sbjct: 2 TMDDGNS-VYVGGLPYDITEEAVRRVFSIYGSVLTV 36
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
+ F+EF + ++A+DA ++G + G+ + VE SR
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR 39
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 226 GSTKSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 348
GS +S F F++F +A A AM+G +LG L++ +
Sbjct: 77 GSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFA 117
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
+ F+EF + ++A+DA ++G + G+ + VE SR
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR 39
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 250 RFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
RF+EF ++++A A MNG + G + ++ SR
Sbjct: 222 RFVEFFDVRDAAKALRVMNGKVISGKPMVIQFSR 255
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 354
+S F F+ N+++ ++GTE LG LKV + K
Sbjct: 124 QSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADK 163
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 226 GSTKSPRFRFIEFENLQEAEDACSAMNG 309
G KS F F+ FEN +A A A+NG
Sbjct: 259 GEGKSKGFGFVNFENSDDAARAVDALNG 286
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 125 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 247
S G+ +YV L E + + L F +G + S V +P G
Sbjct: 324 SQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSG 364
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 125 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
S + ++VGGL + +EDL + F +G++ SV
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSV 356
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 247
T VYV LVE DL+R F ++G++ S V + G
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEG 156
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 119 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG 208
MS R +VGGL EDL+R F ++G
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFG 30
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 119 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG 208
MS R +VGGL EDL+R F ++G
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFG 30
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 119 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG 208
MS R +VGGL EDL+R F ++G
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFG 30
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 119 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG 208
MS R +VGGL EDL+R F ++G
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFG 30
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNGTEMLGATLKVEI 345
+S F F+ + + EAE A S M+G E+ G + V++
Sbjct: 42 RSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVKL 78
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 226 GSTKSPRFRFIEFENLQEAEDACSAMNG 309
G KS F F+ FEN ++A A A+NG
Sbjct: 260 GDGKSRCFGFVNFENPEDAARAVEALNG 287
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 247
T VYV L E ++L+ F +YG ++S V + G
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDG 262
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 122 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 214
S G R+YVG L G+ LE F++ GK+
Sbjct: 245 SGSGNRLYVGNLSWGVDDMALENLFNEQGKV 275
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 122 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 214
S G R+YVG L G+ LE F++ GK+
Sbjct: 253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKV 283
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKL 214
T+V+VGGL +++ R FD++G++
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEI 43
>At1g05510.1 68414.m00563 expressed protein
Length = 241
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 131 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVW 226
G +++ G+ E I+++DLE+ YGK+ W
Sbjct: 121 GGFLFMPGVPEAIQRQDLEKVAKTYGKVYHFW 152
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 131 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 247
GT++Y+ L G+ ED++ F + G+L V + G
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG 123
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 131 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 247
GT++Y+ L G+ ED++ F + G+L V + G
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG 59
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 131 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 247
GT++Y+ L G+ ED++ F + G+L V + G
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG 125
>At5g47330.1 68418.m05834 palmitoyl protein thioesterase family
protein
Length = 314
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 320 NISVPFIALHASSASCKFSNSMKRNLGDLV 231
++SVPFI LH SA C SN+ N L+
Sbjct: 24 SVSVPFIMLHGISAQC--SNARDANFTQLL 51
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 140 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV 229
+YVGGL I ++D+ F YG++ S+ V
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRV 256
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 332 KVAPNISVPFIALHASSASCKFSNSMKRNLGDLV 231
+V PN ++ CKFS MK+ LGDLV
Sbjct: 495 EVLPNNGATRPFCNSCKVRCKFSFLMKQTLGDLV 528
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 131 GTRVYVGGLVEGIKKEDLEREFDKYGKL 214
GT++Y+ L G+ ED++ F + G L
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDL 134
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV 229
T VYV L+E + + L F +YG ++SV V
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVV 233
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 140 VYVGGLVEGIKKEDLEREFDKYGKLNSV 223
VYVG + DLER F K+G++ V
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRV 31
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 122 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 214
+ G RVYVG L G+ LE F + GK+
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKV 230
>At1g60490.1 68414.m06810 phosphatidylinositol 3-kinase (PI3K)
identical to SP|P42339 Phosphatidylinositol 3-kinase (EC
2.7.1.137) (PI3-kinase) (PtdIns-3- kinase) (PI3K)
{Arabidopsis thaliana}
Length = 814
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +1
Query: 202 IWKTKLSLGSTKSPRFRF---IEFENLQEAEDACSAMNGTEMLGATLKVEI 345
+WK + SL S K +F +E+ ++QEA+ A M EM+ +E+
Sbjct: 307 LWKFRFSLMSEKRALTKFLRCVEWSDVQEAKQAIQLMYKWEMIDVCDALEL 357
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKL 214
T++YVGGL +KE L F ++G++
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEI 39
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 140 VYVGGLVEGIKKEDLEREFDKYGKLNSV 223
V+ G ++ DLER F KYGK+ V
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERV 31
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 140 VYVGGLVEGIKKEDLEREFDKYGKLNSV 223
V+ G ++ DLER F KYGK+ V
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERV 31
>At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM
domain-containing protein low similarity to SP|P40748
Synaptotagmin III (SytIII) {Rattus norvegicus}; contains
Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
Length = 1027
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 178 FLLDSLDETADVHASTTRTHGLVLFMKIQLKFIYVNKN 65
FL + DE AD+ + H K+QL+ NKN
Sbjct: 626 FLKHTADELADLSVALVGNHAQASQSKLQLRIFLENKN 663
>At5g22800.1 68418.m02666 aminoacyl-tRNA synthetase family protein
contains Pfam profiles: PF01411 tRNA synthetases class
II (A), PF02272 DHHA1 domain
Length = 978
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 359 TGPAEVGSEVGAAVTSGVVVHSEVREEAGSTTHTVAAAAGRTIVTETDMA 508
+G EVG EV AAV + + ++V A TH + +A + + ET A
Sbjct: 630 SGALEVGKEVEAAVDADLRQRAKVHHTA---THLLQSALKKVVGQETSQA 676
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 247 FRFIEFENLQEAEDACSAMNG-TEMLGATLKV 339
F FI+F L+ ++ A A+NG E+ G T+KV
Sbjct: 308 FGFIQFVQLEHSKAAQIALNGKLEIAGRTIKV 339
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 27.1 bits (57), Expect = 7.3
Identities = 7/32 (21%), Positives = 19/32 (59%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV 229
TR++V + + + D F++YG++ +++
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYM 122
Score = 26.6 bits (56), Expect = 9.7
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +2
Query: 131 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 241
G +++VG L + +DL F ++G + ++ +P
Sbjct: 239 GNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDP 275
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 122 SSGGTR---VYVGGLVEGIKKEDLEREFDKYGKLNSVWV 229
+ GG R ++VGGL I + + + FD++G + V V
Sbjct: 115 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVV 153
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 125 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 223
S ++VGG+ + EDL + F ++G++ SV
Sbjct: 318 STNATIFVGGIDPDVIDEDLRQPFSQFGEVVSV 350
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 253 FIEFENLQEAEDACSAMNGTEMLGATLKVEISR 351
F++F + + AEDA ++NGT + T+++ R
Sbjct: 360 FVQFADRKSAEDAIESLNGTVIGKNTVRLSWGR 392
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNG 309
+S F F+ F N Q+A+ A + MNG
Sbjct: 183 RSRGFGFVSFRNQQDAQTAINEMNG 207
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Frame = +2
Query: 140 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP 244
+Y+ L E IKKE+L+R F ++G++ V VAL P
Sbjct: 12 IYIQNLNERIKKEELKRSLYCLFSQFGRILDV-VALKTP 49
>At1g73130.1 68414.m08456 expressed protein
Length = 646
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 208 KTKLSLGSTKSPRFRFIEFENLQEAEDACSAMNG 309
++ L L S++ PRF ++ E+ + AED S + G
Sbjct: 31 QSTLCLKSSEPPRFEYVRGESKEVAEDHSSNVQG 64
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNG 309
+S F F+ F N Q+A+ A + MNG
Sbjct: 191 RSRGFGFVSFRNQQDAQTAINEMNG 215
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 235 KSPRFRFIEFENLQEAEDACSAMNG 309
+S F F+ F N Q+A+ A + MNG
Sbjct: 187 RSRGFGFVSFRNQQDAQTAINEMNG 211
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 131 GTRVYVGGLVEGIKKEDLEREFDKYGKL 214
GTR++V L +G+ ED+ F + G++
Sbjct: 92 GTRLHVTNLDQGVTNEDIRELFSEIGEV 119
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 253 FIEFENLQEAEDACSAMNGTEMLGATLKV 339
+IEF ++++A+ A +NG E+ G LK+
Sbjct: 335 YIEFFDVRKAKVALQGLNGLEVAGRQLKL 363
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 238 SPRFRFIEFENLQEAEDACSAMNGTEMLGATLKV 339
S + F +++L + AC+A+NG +M TL V
Sbjct: 399 SKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 432
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 238 SPRFRFIEFENLQEAEDACSAMNGTEMLGATLKV 339
S + F +++L + AC+A+NG +M TL V
Sbjct: 399 SKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 432
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 238 SPRFRFIEFENLQEAEDACSAMNGTEMLGATLKV 339
S + F +++L + AC+A+NG +M TL V
Sbjct: 399 SKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 432
>At4g25110.1 68417.m03612 latex-abundant family protein (AMC2) /
caspase family protein contains similarity to
latex-abundant protein [Hevea brasiliensis] gb:AAD13216;
contains Pfam profile PF00656: ICE-like protease
(caspase) p20 domain
Length = 418
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 210 FPYLSNSRSRSSFLIPSTRPPTYTRVP 130
FP+ ++S + S+F+ P P YT P
Sbjct: 49 FPFPNSSPAPSTFIYPPPTPSPYTHAP 75
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 134 TRVYVGGLVEGIKKEDLEREFDKYGKL 214
T+V+VGGL KE + F KYG +
Sbjct: 17 TKVFVGGLAWDTHKEAMYDHFIKYGDI 43
>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 167 IKKEDLEREFDKYGKLNSVWVALNPPG 247
I KE LE+ + K N VW+ NP G
Sbjct: 380 IPKEGLEKIWKTMLKFNFVWIEFNPYG 406
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 253 FIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 354
F++F+N A A +NG LG L+V+ + K
Sbjct: 69 FVDFKNEAFASQAHRQLNGLRFLGKVLQVQRANK 102
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 140 VYVGGLVEGIKKEDLEREFDKYGKLNSV 223
+YVGGL I ++D+ +F +G++ S+
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESI 257
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,510,674
Number of Sequences: 28952
Number of extensions: 156551
Number of successful extensions: 690
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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