Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0971
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39) 62 5e-10
SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46) 51 7e-07
SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0) 37 0.016
SB_28920| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.24) 32 0.47
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08) 31 0.82
SB_13458| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74) 29 4.4
SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15) 29 4.4
SB_58076| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_44282| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 28 7.6
SB_10143| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)
Length = 387
Score = 61.7 bits (143), Expect = 5e-10
Identities = 30/47 (63%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Frame = +3
Query: 516 KVEVHGEK-GVETVNTKNILIASGSEVTPFPGVTFDEKQIITSTGAL 653
KV V+ + E + TKNILIA+GSEVTPFPG+ DEK II+STGAL
Sbjct: 59 KVTVYKDDLSTEVIKTKNILIATGSEVTPFPGIEIDEKHIISSTGAL 105
Score = 56.0 bits (129), Expect = 3e-08
Identities = 29/52 (55%), Positives = 35/52 (67%)
Frame = +2
Query: 122 LVRIATRQYATTHDADLVVIGSGPGGYVAAIKAAQLGMKVVSVERTLL*EVL 277
+ R ++ + DLVVIGSGPGGYVAAIKAAQLGMKV + L EV+
Sbjct: 21 ITRQKVLHFSLLGEVDLVVIGSGPGGYVAAIKAAQLGMKVTVYKDDLSTEVI 72
>SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)
Length = 320
Score = 51.2 bits (117), Expect = 7e-07
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +1
Query: 262 TLGGTCLNVGCIPSKALLHNSHLYHMA 342
TLGGTCLNVGC+PSKALLH S LY A
Sbjct: 291 TLGGTCLNVGCMPSKALLHASELYEAA 317
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +2
Query: 167 DLVVIGSGPGGYVAAIKAAQLGMKVVSVE 253
D+++IG GPGGY AAI+A QLG+KV +E
Sbjct: 259 DVLIIGGGPGGYNAAIRAGQLGLKVACIE 287
>SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)
Length = 394
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 119 SLVRIATR-QYATTHDADLVVIGSGPGGYVAAIKAAQLGMKVVSVERTLL 265
S +RI+ R A D VVIG G GG +A +AA+ G+K V +E L
Sbjct: 35 SQMRISLRLMMAAVKAYDYVVIGGGSGGIASARRAAEFGVKAVVIEHARL 84
Score = 35.1 bits (77), Expect = 0.050
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 265 LGGTCLNVGCIPSKALLHNSHLYHMAKH-DFKQRG-IETGEVTFDFKKMM 408
LGGTC+NVGC+P KA H+ +A H F G ++ G+ F K ++
Sbjct: 84 LGGTCVNVGCVPKKA-----HVDFVAGHAQFTPDGNVKVGDQLFSGKHIL 128
>SB_28920| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.24)
Length = 284
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = +2
Query: 170 LVVIGSGPGGYVAAIKAAQLGMKVVSVER 256
++VIGSGP G +A++AA LG +V+ +E+
Sbjct: 63 VLVIGSGPCGLRSALEAALLGAQVMVIEK 91
>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
Length = 1631
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 152 TTHDADLVVIGSGPGGYVAAIKAAQLGMKVVSVER 256
T ++VIG+GP G AI+ A LG +VV VE+
Sbjct: 551 TCEHLQVLVIGAGPIGLRTAIEMALLGAQVVVVEK 585
>SB_13458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 161 DADLVVIGSGPGGYVAAIKAAQL 229
+AD+V++G GP G A+IK QL
Sbjct: 7 EADVVIVGGGPAGLSASIKLKQL 29
>SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 161 DADLVVIGSGPGGYVAAIKAAQLGMKVVSVER 256
+ D VVIGSG GG A A+ G K++ +E+
Sbjct: 85 EVDAVVIGSGIGGMTCASLLAKTGKKILVLEQ 116
>SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +2
Query: 65 LNMGYKFLKLASPTFRSGSLVRIATRQYATTHDADLVVIGSGPGGYVAAIKAAQLGMKVV 244
++ GY FL + T +S S + + +D D G G V I +A++GM
Sbjct: 962 IDEGYTFLIKLTSTSKSSSQTTLTMERMCKLYDGDYWYCVKGKGKRV-GIPSARMGMVTF 1020
Query: 245 SVERTLL*EVLVSML 289
+ R L E+ + ++
Sbjct: 1021 TTPRRFLTEIWLKII 1035
>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1240
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -3
Query: 282 ETSTS*SRVLSTETTFMPSWAALIAATYPPGPEPITT 172
ETST S + + T P++A IA T PP P+P TT
Sbjct: 855 ETSTESST--TAQPTQPPTFAPSIAPTQPPTPKPPTT 889
>SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74)
Length = 604
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 232 HEGGLSRKDPTLGGTCLNVGCIPSKALLHNSHLYHMAKHD 351
H G L+ DPT GTC SK + H+S Y K++
Sbjct: 565 HTGTLASFDPTGHGTCYFRNGAVSKLITHSSTCYEHMKNN 604
>SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15)
Length = 510
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 510 GNYSSYTFDKINLVLLKEHCNTSC-EAFNSISFIFHHLFE 394
G ++Y ++NL+ L+EH EAFN F +H L E
Sbjct: 390 GQATAYMVGQLNLMRLREHARQQLGEAFNLKDFHYHLLKE 429
>SB_58076| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 240 TFMPSWAALIAATYPPG-PEPITTRSASCVVAYCL 139
T +P+W AL A YP G P T R AS +A L
Sbjct: 19 TLIPTWRALNDAPYPVGDPLESTCRHASLALAVVL 53
>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1499
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +2
Query: 26 RILYFNPKIQKKLLNMGYKFLKLASPTFRSGSLVRIATRQYATTHDADLVVIGSGPGGYV 205
RILY NPK + L+M ++ P+F S S+ I T D L ++ + G
Sbjct: 217 RILYVNPKNKVVSLSMLDSIIQFKLPSFESCSIGDIFDNVTITRGDQGLGLLANVKDGLN 276
Query: 206 AAIKAAQLGMKVV 244
+ +Q+ K +
Sbjct: 277 GFVHFSQVSDKQI 289
>SB_44282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 280 LNVGCIPSKALLHNSHLYHMAKHDFKQRGIETGEVTFDFKKMMEY 414
L C+P ++ ++ + +AKHD E TF F K+M +
Sbjct: 124 LQSACVPDHYIVQKNYRFFLAKHDGSLHFAR--EATFAFYKIMSF 166
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = -3
Query: 240 TFMPSWAALIAATYPPGPEPITTRSASCVVAYCLVA 133
+F PS A T PP P T S S VVA LVA
Sbjct: 160 SFKPSAAGASVPTAPPVPVVSATFSPSVVVASALVA 195
>SB_10143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 211 SCYVSTRARTDNNKICIMCGSILS 140
S Y STR TD+N + ++ G+ILS
Sbjct: 43 SIYYSTRKYTDSNGLIVVVGTILS 66
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,596,544
Number of Sequences: 59808
Number of extensions: 429278
Number of successful extensions: 1224
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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