Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0971
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.9  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   7.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -2

Query: 196  TRARTDNNKICIMCGSILSCSNSY*TSTSKGRRGKF 89
            T+ +  ++KIC     ++SC++      +K +  KF
Sbjct: 1692 TQVKETDDKICFTMRPVVSCASGCTAVETKSKPYKF 1727



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 445  GIAMLFQKNKVNLVKGVGTIVAQI 516
            G+  ++  N + L K  GT+ AQI
Sbjct: 933  GLPFVYTFNVIKLTKTSGTVQAQI 956


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 509 ATIVPTPLTRLTLFF*KSIAIPPVRPLTALALY 411
           A +V + LT +T+F      IPPV  + AL ++
Sbjct: 233 ALLVTSMLTLVTMFTGLKSDIPPVAYVKALDVW 265


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 569 NIFGINSLNTLLSVYFNFIWATIVPTPL 486
           N +  N+ N    +Y+N  +   VP P+
Sbjct: 94  NNYNNNNYNNYKKLYYNINYIEQVPVPI 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,323
Number of Sequences: 438
Number of extensions: 4395
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)