Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0970
(392 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.34
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac... 27 0.79
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 26 1.8
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 3.2
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 4.2
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 25 4.2
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 4.2
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 4.2
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 4.2
SPAC227.04 |||autophagy C terminal domain family protein|Schizos... 24 7.3
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 24 9.7
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 24 9.7
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom... 24 9.7
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 24 9.7
>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 168
Score = 28.7 bits (61), Expect = 0.34
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +3
Query: 204 QINLFGREVGPAVNNFLRRSLST*RTTQPRSAVFWSTSPNSSSTD 338
++NLF +++G + N+F R+L T ++ + + S+S NS S D
Sbjct: 120 ELNLFAKKLGFSKNSFDARALDT--ESEDETEIEKSSSENSDSVD 162
>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 0.79
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -1
Query: 137 EGDGSGSLSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 24
EG LSND L+ S + P D + ENAD+SFS D
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 1.8
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -1
Query: 164 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 45
+ DN ++ SGS + D + + G+E+ +D EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 3.2
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -1
Query: 134 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 30
G GSG L ND L+ K S P +NA S G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.0 bits (52), Expect = 4.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 257 KIPVYLTDYAAEVSRVLEYVAQL 325
K+P + DY EV R+++ A L
Sbjct: 968 KVPTFYADYVNEVKRIIQRNANL 990
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 4.2
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 30 SAEGEIRIFSRVLRSFASGGLALENVVAEA--TASVSLADNIIVSDI-GAAITIGDVK 194
S +GEI + V + + G L NVV EA A D +I SD+ AA + D+K
Sbjct: 320 SKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLK 377
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 4.2
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -2
Query: 337 SVDDELGDVLQNTADLGCVVRQV--DRDLLRKLLTAGPTSRPKRLIWR 200
S+ D DVL T D G V+R + D D+ +T R +R I++
Sbjct: 292 SILDHSLDVLSRTGDNGDVIRGISEDIDVCLSKITKTKNGRERREIYK 339
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 4.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 220 PKRLIWRLDLTSPI 179
PK LIWR LT+P+
Sbjct: 436 PKELIWRSRLTNPV 449
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 4.2
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 167 SDVTDNDVVCEGDGSGSLSNDVLKGK-SSGSERPQDAAENADF 42
SDV D +V+ E + +SN V + K S E D A++ F
Sbjct: 404 SDVEDTEVIIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMF 446
>SPAC227.04 |||autophagy C terminal domain family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 24.2 bits (50), Expect = 7.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 218 RTRSWTSRQQLPKKIPVYLTDYAAEVSRVLEYVAQLVI 331
RTR + Q+ K+ P YL+ + + +VL + Q +I
Sbjct: 133 RTRDYFEMLQIDKEDPKYLSLWLLYIHQVLSPLTQPII 170
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 23.8 bits (49), Expect = 9.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 162 IGAAITIGDVKSNLQIN 212
I + I GD+K+NLQ+N
Sbjct: 79 IASKIVSGDLKTNLQVN 95
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 23.8 bits (49), Expect = 9.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 108 VAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFG 221
V E + + NII IG I G +NL I L+G
Sbjct: 579 VLEGITNQHVGLNIITELIGGYILPGKPLANLMIKLYG 616
>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 23.8 bits (49), Expect = 9.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 280 LRSRGQPCSGVRRPTRHQQITVNYSNDTCESKINY 384
+ SRG V T + N ++ TCES+++Y
Sbjct: 312 MTSRGLAIKAVPGQTTADMMAWNGASTTCESQLDY 346
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 23.8 bits (49), Expect = 9.7
Identities = 7/22 (31%), Positives = 15/22 (68%)
Frame = +1
Query: 292 GQPCSGVRRPTRHQQITVNYSN 357
G PCSG+ + +Q+T+++ +
Sbjct: 318 GGPCSGILNKNQCEQVTMDFDS 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,446,152
Number of Sequences: 5004
Number of extensions: 26298
Number of successful extensions: 118
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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