Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0970
         (392 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67953-4|AAL13329.1|  732|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical ...    28   2.1  
AF016670-9|AAB66107.2|  701|Caenorhabditis elegans Hypothetical ...    28   2.1  
U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical p...    27   3.6  
Z68270-11|CAJ90499.1|  394|Caenorhabditis elegans Hypothetical p...    27   4.8  
Z68270-10|CAA92572.2|  459|Caenorhabditis elegans Hypothetical p...    27   4.8  
U41034-4|AAY43995.1|  385|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AY305838-1|AAR11983.1|  459|Caenorhabditis elegans nuclear recep...    27   4.8  
AF083227-1|AAD03685.1|  290|Caenorhabditis elegans nuclear recep...    27   4.8  
Z49128-5|CAA88955.1|  676|Caenorhabditis elegans Hypothetical pr...    27   6.3  

>U67953-4|AAL13329.1|  732|Caenorhabditis elegans Hypothetical
           protein ZC13.3 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 276 RTTQPRSAVFWSTSPNSSSTDYCKLL 353
           +T++PR +  W+T+P     DYC +L
Sbjct: 523 QTSKPRKST-WTTTPEPKQDDYCDIL 547


>AF068721-9|AAC19265.1|  570|Caenorhabditis elegans Hypothetical
           protein ZK1055.7 protein.
          Length = 570

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 85  PEAKDLRTRLKMRISPSAEPTDAETLGT 2
           P + D + R+K+ +SP+A P DAE  GT
Sbjct: 491 PRSTDEKIRVKL-VSPAATPYDAEKAGT 517


>AF016670-9|AAB66107.2|  701|Caenorhabditis elegans Hypothetical
           protein K02F6.9 protein.
          Length = 701

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +3

Query: 213 LFGREVGPAVNNFLRRSLST*RTTQPRSAVFWSTSPNSSSTDYCKLLERYL 365
           + G E+G A ++F R+   + R  Q     +W T  NSS+T+Y +L E+ L
Sbjct: 532 VIGHEIGHAFDHFHRKLDESGRQQQ-----YWFTETNSSNTEY-ELREKCL 576


>U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK1290.10 protein.
          Length = 412

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -2

Query: 202 RLDLTSPIVIAAPMSLTMM-LSARETEAVASATTFSRASPPEAK 74
           RLD T P+  A P+ L ++ ++ +E +  AS T+   A+PP A+
Sbjct: 59  RLDNTIPVPPALPIGLPIIQITTKEPQPPASLTSLP-AAPPSAQ 101


>Z68270-11|CAJ90499.1|  394|Caenorhabditis elegans Hypothetical
           protein ZC410.1b protein.
          Length = 394

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 293 PRLRSPSGRQGSS*EVVDGWSNFASEE 213
           P   SPS RQ SS E +D WS    EE
Sbjct: 37  PNSNSPSTRQSSSPEEMDDWSFQMFEE 63


>Z68270-10|CAA92572.2|  459|Caenorhabditis elegans Hypothetical
           protein ZC410.1a protein.
          Length = 459

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 293 PRLRSPSGRQGSS*EVVDGWSNFASEE 213
           P   SPS RQ SS E +D WS    EE
Sbjct: 102 PNSNSPSTRQSSSPEEMDDWSFQMFEE 128


>U41034-4|AAY43995.1|  385|Caenorhabditis elegans Hypothetical
           protein M02D8.7 protein.
          Length = 385

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 226 SRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETE 125
           S PK  I R++  SP+V  AP+ +  +L    TE
Sbjct: 330 SDPKTYIARIEALSPVVRMAPLRILDILERTRTE 363


>AY305838-1|AAR11983.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-11 protein.
          Length = 459

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 293 PRLRSPSGRQGSS*EVVDGWSNFASEE 213
           P   SPS RQ SS E +D WS    EE
Sbjct: 102 PNSNSPSTRQSSSPEEMDDWSFQMFEE 128


>AF083227-1|AAD03685.1|  290|Caenorhabditis elegans nuclear receptor
           NHR-11 protein.
          Length = 290

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 293 PRLRSPSGRQGSS*EVVDGWSNFASEE 213
           P   SPS RQ SS E +D WS    EE
Sbjct: 54  PNSNSPSTRQSSSPEEMDDWSFQMFEE 80


>Z49128-5|CAA88955.1|  676|Caenorhabditis elegans Hypothetical
           protein M03C11.5 protein.
          Length = 676

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -2

Query: 346 LQ*SVDDELGDVLQNTADLGCVVRQVDRDLLRKLLTAGPTSRPKRLIWR---LDLTSPIV 176
           +Q +++  +G +LQNT  L      ++R  L    TA   SR    +WR    D +SP+ 
Sbjct: 1   MQSAINLNIGGLLQNTGLLRNSRNGINRKPLDIEATAASLSRVYHQVWRQFSSDTSSPVT 60

Query: 175 I 173
           I
Sbjct: 61  I 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,051,725
Number of Sequences: 27780
Number of extensions: 152822
Number of successful extensions: 547
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)