Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0969
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    32   0.089
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   4.4  

>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 31.9 bits (69), Expect = 0.089
 Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +2

Query: 428 LGMHFVLLQNSSTLYPVQILQRTINKQQILDVINN-ITRMPILCDGPKEDMEPLLLPLLA 604
           L M+   L+ ++    + + +  +  + + +V+N  +TR+P+L   P++++EP+L   + 
Sbjct: 21  LAMYLDNLEANTDKNVLALCREYLASENVKEVLNLFLTRLPLLAQAPEKELEPILAVFIN 80

Query: 605 YIAE 616
            I E
Sbjct: 81  LIQE 84


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +2

Query: 530 NITRMPILCDGPKEDMEPLLLPLLAYIAERKND 628
           +++ +P+L +  K+D+E  + PL A+  E ++D
Sbjct: 708 SVSNLPLLTERDKKDLESTVDPLDAHSIEEEDD 740


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,998
Number of Sequences: 5004
Number of extensions: 47485
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)