Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0969
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_34021| Best HMM Match : Zip (HMM E-Value=0)                         28   6.2  

>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +3

Query: 390 IARIERDNRTNNTWACILYCYRTLLHCTRYKFFKEPLTNNKY*MLLITSQE 542
           +A++ +  +  + +AC+  C R    CT   F+K+  +N K+   L+T  +
Sbjct: 91  VAKLLKSVQVVDDFACVRECTRAEGSCTSVNFYKDKDSNGKHLCELLTDDK 141


>SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 434 MHFVLLQNS-STLYPVQILQRTINKQQILDVINNITRM-PILCDGPKEDME 580
           +HF  L+ S S  Y   +    INKQQ+  V+ N+  + P++   PK   E
Sbjct: 203 LHFAYLEQSDSGDYVCTVTNNNINKQQVRTVVLNVMPVRPLIPQPPKVSTE 253


>SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 449 LQNSSTLYPVQILQRTINKQQILDVINNITRMPILCDGPKEDMEPLL 589
           L +   L PV+ +   +  Q++  VIN   R+P  CD  KED   LL
Sbjct: 154 LNDMCPLNPVEAIME-LTLQEVEHVINWAKRVPGFCDVDKEDQISLL 199


>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
          Length = 808

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +3

Query: 390 IARIERDNRTNNTWACILYCYRTLLHCTRYKFFKEPLTNNKY*MLLITSQE 542
           + ++ +  +  + +AC+  C R    CT   F+K+  +N K+   L+T  +
Sbjct: 77  VTKLLKSVKVVDDFACVRECTRAEESCTSVNFYKDRDSNGKHLCELLTDDK 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,123,344
Number of Sequences: 59808
Number of extensions: 323658
Number of successful extensions: 571
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)