Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0968
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 150 2e-37
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 147 1e-36
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 81 2e-16
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 55 1e-08
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.21
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.5
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 27 3.4
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe... 26 4.5
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 26 4.5
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 26 4.5
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.5
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.9
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 5.9
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 7.9
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 150 bits (364), Expect = 2e-37
Identities = 69/85 (81%), Positives = 76/85 (89%), Gaps = 1/85 (1%)
Frame = +1
Query: 259 QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEIT 438
Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE SV EIT
Sbjct: 233 QVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEIT 292
Query: 439 NACFEPANQMVKCDPRHGKYMA-CL 510
N CFEP NQMVKCDPR G+YMA CL
Sbjct: 293 NQCFEPYNQMVKCDPRAGRYMATCL 317
Score = 141 bits (341), Expect = 1e-34
Identities = 61/82 (74%), Positives = 75/82 (91%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 181
SGF +LL+ERL+++Y KKSKL+F++YPAPQVST+VVEPYNS+LTTH TL+ +DC FMVDN
Sbjct: 147 SGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDN 206
Query: 182 EAIYDICRRNLDIERPTYTNLN 247
E+ YDICRRNLDIERP+Y NLN
Sbjct: 207 ESCYDICRRNLDIERPSYENLN 228
Score = 100 bits (240), Expect = 2e-22
Identities = 42/61 (68%), Positives = 51/61 (83%)
Frame = +3
Query: 510 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 689
+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAVC
Sbjct: 317 LLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVC 376
Query: 690 M 692
M
Sbjct: 377 M 377
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 147 bits (357), Expect = 1e-36
Identities = 68/85 (80%), Positives = 75/85 (88%), Gaps = 1/85 (1%)
Frame = +1
Query: 259 QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEIT 438
Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE SV EIT
Sbjct: 237 QVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEIT 296
Query: 439 NACFEPANQMVKCDPRHGKYMA-CL 510
N CFEP NQMVKCDPR G+YMA CL
Sbjct: 297 NQCFEPYNQMVKCDPRTGRYMATCL 321
Score = 145 bits (352), Expect = 5e-36
Identities = 63/82 (76%), Positives = 75/82 (91%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 181
SG +LL+ERL+++YGKKS L+F++YPAPQVST+VVEPYNS+LTTH TL++SDC FMVDN
Sbjct: 151 SGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDN 210
Query: 182 EAIYDICRRNLDIERPTYTNLN 247
EA YDICRRNLDIERPTY NLN
Sbjct: 211 EACYDICRRNLDIERPTYENLN 232
Score = 105 bits (251), Expect = 8e-24
Identities = 43/61 (70%), Positives = 53/61 (86%)
Frame = +3
Query: 510 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 689
+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVC
Sbjct: 321 LLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVC 380
Query: 690 M 692
M
Sbjct: 381 M 381
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 80.6 bits (190), Expect = 2e-16
Identities = 33/80 (41%), Positives = 52/80 (65%)
Frame = +1
Query: 262 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITN 441
+++ +T S RF G LN DL + N+VP+PR+HF +V +AP+ + + + +SV E+T
Sbjct: 232 VMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQ 291
Query: 442 ACFEPANQMVKCDPRHGKYM 501
F+ N MV DPRHG+Y+
Sbjct: 292 QMFDANNMMVAADPRHGRYL 311
Score = 72.5 bits (170), Expect = 5e-14
Identities = 33/82 (40%), Positives = 51/82 (62%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 181
SG +LL+ ++ +Y + F++ PAP+ S VVEPYN+ L+ H +E+SD F +DN
Sbjct: 145 SGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDN 204
Query: 182 EAIYDICRRNLDIERPTYTNLN 247
EA+ I L I+ P+Y +LN
Sbjct: 205 EALSSIFANTLKIKSPSYDDLN 226
Score = 35.1 bits (77), Expect = 0.010
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 513 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 641
L+RG V K+V+ I +++TK + FV+W P + PP
Sbjct: 316 LFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPP 358
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 54.8 bits (126), Expect = 1e-08
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQ-VSTAVVEPYNSILTTHTTLEHSDCAFMVD 178
SG S L+ERL+ Y KK ++++P Q VS VV+PYNS+L ++D ++D
Sbjct: 147 SGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLD 206
Query: 179 NEAIYDICRRNLDIERPTYTNLN 247
N A+ I L + PT+ N
Sbjct: 207 NAALAHIAADRLHTQNPTFHQQN 229
Score = 54.0 bits (124), Expect = 2e-08
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = +1
Query: 226 PNLHQPESSHGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS---A 396
P HQ ++S+ T +LR+ G +N DL +L+P PR HF L +Y P +
Sbjct: 223 PTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVE 282
Query: 397 EKAYHEQLSVAEITNACFEPANQMVKCDP 483
E + +V ++ P NQMV +P
Sbjct: 283 EAKAIRKTTVLDVMRRLLLPKNQMVSVNP 311
Score = 33.5 bits (73), Expect = 0.030
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +3
Query: 504 LLMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 647
+L + +G+ P DV+ ++ I+ +R F+ W P +V ++ + P +
Sbjct: 320 ILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYI 367
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 520 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 654
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 320 PSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 466
P+++ P S + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/64 (28%), Positives = 24/64 (37%)
Frame = +3
Query: 489 WQVHGLLMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLA 668
W+ Y + KDVN + TI +W PTG ++ Y V D
Sbjct: 141 WRHSSFAQYYLYNTETKDVNM-LGQDNEHWTISLAEWSPTGHQLSFVYNNDLYVRKND-G 198
Query: 669 KVQR 680
VQR
Sbjct: 199 NVQR 202
>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 186 PSMTSAAVISTLSAQPTPT*IVSRTDCLL 272
P T A V TL +P I++R+DC L
Sbjct: 33 PKRTYALVCETLKYKPVLDEIIARSDCFL 61
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 383 QSSLPRRPTMNSFPSPRSQTHASSPPTR 466
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 4.5
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -1
Query: 687 RRHVEPWPSRLRAPRWV 637
+R+ + WPS++ P+WV
Sbjct: 153 QRYSDSWPSKITLPKWV 169
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 495 VHGLLMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQ 635
V G + L R ++ + N AIA+I +I+F ++ P GF ++++
Sbjct: 294 VRGAVRLMRFLMLQEVKNDAIASITLSSSIEFTEF-PLGFNENVDFE 339
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = +1
Query: 556 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 642
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 317 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSP 457
SPS LT L S++ S + + + R+ T +S SP+ Q+ S+P
Sbjct: 619 SPSKMLT-TLRNNSSTFPSLRKNAMIARKSTADSLSSPKRQSVPSTP 664
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +2
Query: 344 LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 496
LTP + S +S + +S +R ++N+ PS + +H+SS T + PV+++
Sbjct: 130 LTPKNPSLFSSSNAAS--QRGSLNTAPSNFAYSHSSSLQTSASSRPPVLSN 178
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 553 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 648
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,471
Number of Sequences: 5004
Number of extensions: 64006
Number of successful extensions: 238
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -