Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0968
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 157 7e-39
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 157 7e-39
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 157 7e-39
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 157 7e-39
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 153 8e-38
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 153 8e-38
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 146 2e-35
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 83 1e-16
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 83 1e-16
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 83 2e-16
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 83 2e-16
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 82 3e-16
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 82 3e-16
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 82 3e-16
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 82 3e-16
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 82 4e-16
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 57 1e-08
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 57 1e-08
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro... 36 0.034
At1g01190.1 68414.m00032 cytochrome P450, putative similar to cy... 31 0.73
At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03... 30 1.3
At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identica... 30 1.7
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 30 1.7
At2g15020.1 68415.m01710 expressed protein and genefinder 28 5.1
At1g68080.1 68414.m07777 expressed protein 28 5.1
At1g62870.1 68414.m07099 expressed protein 28 5.1
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 28 5.1
At3g01770.1 68416.m00116 DNA-binding bromodomain-containing prot... 27 8.9
At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family... 27 8.9
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 157 bits (381), Expect = 7e-39
Identities = 70/83 (84%), Positives = 78/83 (93%)
Frame = +1
Query: 259 QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEIT 438
Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVAEIT
Sbjct: 233 QVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEIT 292
Query: 439 NACFEPANQMVKCDPRHGKYMAC 507
N+ FEPA+ M KCDPRHGKYMAC
Sbjct: 293 NSAFEPASMMAKCDPRHGKYMAC 315
Score = 140 bits (340), Expect = 6e-34
Identities = 62/82 (75%), Positives = 75/82 (91%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 181
SG SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DN
Sbjct: 147 SGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDN 206
Query: 182 EAIYDICRRNLDIERPTYTNLN 247
EAIYDICRR+L+IERPTYTNLN
Sbjct: 207 EAIYDICRRSLNIERPTYTNLN 228
Score = 129 bits (311), Expect = 2e-30
Identities = 56/61 (91%), Positives = 59/61 (96%)
Frame = +3
Query: 510 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 689
++YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVC
Sbjct: 317 LMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVC 376
Query: 690 M 692
M
Sbjct: 377 M 377
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 157 bits (381), Expect = 7e-39
Identities = 70/83 (84%), Positives = 78/83 (93%)
Frame = +1
Query: 259 QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEIT 438
Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVAEIT
Sbjct: 233 QVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEIT 292
Query: 439 NACFEPANQMVKCDPRHGKYMAC 507
N+ FEPA+ M KCDPRHGKYMAC
Sbjct: 293 NSAFEPASMMAKCDPRHGKYMAC 315
Score = 140 bits (340), Expect = 6e-34
Identities = 62/82 (75%), Positives = 75/82 (91%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 181
SG SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DN
Sbjct: 147 SGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDN 206
Query: 182 EAIYDICRRNLDIERPTYTNLN 247
EAIYDICRR+L+IERPTYTNLN
Sbjct: 207 EAIYDICRRSLNIERPTYTNLN 228
Score = 129 bits (311), Expect = 2e-30
Identities = 56/61 (91%), Positives = 59/61 (96%)
Frame = +3
Query: 510 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 689
++YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVC
Sbjct: 317 LMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVC 376
Query: 690 M 692
M
Sbjct: 377 M 377
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 157 bits (381), Expect = 7e-39
Identities = 70/83 (84%), Positives = 78/83 (93%)
Frame = +1
Query: 259 QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEIT 438
Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVAEIT
Sbjct: 233 QVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEIT 292
Query: 439 NACFEPANQMVKCDPRHGKYMAC 507
N+ FEPA+ M KCDPRHGKYMAC
Sbjct: 293 NSAFEPASMMAKCDPRHGKYMAC 315
Score = 140 bits (339), Expect = 8e-34
Identities = 62/82 (75%), Positives = 74/82 (90%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 181
SG SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DN
Sbjct: 147 SGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDN 206
Query: 182 EAIYDICRRNLDIERPTYTNLN 247
EAIYDICRR+L IERPTYTNLN
Sbjct: 207 EAIYDICRRSLSIERPTYTNLN 228
Score = 129 bits (311), Expect = 2e-30
Identities = 56/61 (91%), Positives = 59/61 (96%)
Frame = +3
Query: 510 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 689
++YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVC
Sbjct: 317 LMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVC 376
Query: 690 M 692
M
Sbjct: 377 M 377
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 157 bits (381), Expect = 7e-39
Identities = 70/83 (84%), Positives = 78/83 (93%)
Frame = +1
Query: 259 QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEIT 438
Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVAEIT
Sbjct: 233 QVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEIT 292
Query: 439 NACFEPANQMVKCDPRHGKYMAC 507
N+ FEPA+ M KCDPRHGKYMAC
Sbjct: 293 NSAFEPASMMAKCDPRHGKYMAC 315
Score = 140 bits (339), Expect = 8e-34
Identities = 62/82 (75%), Positives = 74/82 (90%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 181
SG SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DN
Sbjct: 147 SGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDN 206
Query: 182 EAIYDICRRNLDIERPTYTNLN 247
EAIYDICRR+L IERPTYTNLN
Sbjct: 207 EAIYDICRRSLSIERPTYTNLN 228
Score = 129 bits (311), Expect = 2e-30
Identities = 56/61 (91%), Positives = 59/61 (96%)
Frame = +3
Query: 510 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 689
++YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVC
Sbjct: 317 LMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVC 376
Query: 690 M 692
M
Sbjct: 377 M 377
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 153 bits (372), Expect = 8e-38
Identities = 69/83 (83%), Positives = 75/83 (90%)
Frame = +1
Query: 259 QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEIT 438
QI+SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVISA KAYHEQLSV EIT
Sbjct: 233 QIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEIT 292
Query: 439 NACFEPANQMVKCDPRHGKYMAC 507
NA FEPA+ M KCDPRHGKYMAC
Sbjct: 293 NAVFEPASMMAKCDPRHGKYMAC 315
Score = 145 bits (351), Expect = 3e-35
Identities = 66/82 (80%), Positives = 75/82 (91%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 181
SG SLL+ERLSVDYGKKSKL F IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DN
Sbjct: 147 SGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDN 206
Query: 182 EAIYDICRRNLDIERPTYTNLN 247
EAIYDICRR+LDIERPTYTNLN
Sbjct: 207 EAIYDICRRSLDIERPTYTNLN 228
Score = 128 bits (310), Expect = 3e-30
Identities = 55/61 (90%), Positives = 59/61 (96%)
Frame = +3
Query: 510 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 689
++YRGDVVPKDVNAA+ TIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVC
Sbjct: 317 LMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVC 376
Query: 690 M 692
M
Sbjct: 377 M 377
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 153 bits (372), Expect = 8e-38
Identities = 69/83 (83%), Positives = 75/83 (90%)
Frame = +1
Query: 259 QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEIT 438
QI+SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVISA KAYHEQLSV EIT
Sbjct: 233 QIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEIT 292
Query: 439 NACFEPANQMVKCDPRHGKYMAC 507
NA FEPA+ M KCDPRHGKYMAC
Sbjct: 293 NAVFEPASMMAKCDPRHGKYMAC 315
Score = 145 bits (351), Expect = 3e-35
Identities = 66/82 (80%), Positives = 75/82 (91%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 181
SG SLL+ERLSVDYGKKSKL F IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DN
Sbjct: 147 SGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDN 206
Query: 182 EAIYDICRRNLDIERPTYTNLN 247
EAIYDICRR+LDIERPTYTNLN
Sbjct: 207 EAIYDICRRSLDIERPTYTNLN 228
Score = 128 bits (310), Expect = 3e-30
Identities = 55/61 (90%), Positives = 59/61 (96%)
Frame = +3
Query: 510 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 689
++YRGDVVPKDVNAA+ TIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVC
Sbjct: 317 LMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVC 376
Query: 690 M 692
M
Sbjct: 377 M 377
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 146 bits (353), Expect = 2e-35
Identities = 64/83 (77%), Positives = 72/83 (86%)
Frame = +1
Query: 259 QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEIT 438
Q +SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVIS+ KAYHEQ SV EIT
Sbjct: 233 QTISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEIT 292
Query: 439 NACFEPANQMVKCDPRHGKYMAC 507
+ FEP+N M KCDPRHGKYMAC
Sbjct: 293 TSVFEPSNMMAKCDPRHGKYMAC 315
Score = 140 bits (339), Expect = 8e-34
Identities = 63/82 (76%), Positives = 74/82 (90%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 181
SG SLL+ERLSVD+GKKSKL F IYP+PQVSTAVVEPYNS+L+TH+ LEH+D ++DN
Sbjct: 147 SGLGSLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDN 206
Query: 182 EAIYDICRRNLDIERPTYTNLN 247
EAIYDICRR+LDIERPTY+NLN
Sbjct: 207 EAIYDICRRSLDIERPTYSNLN 228
Score = 123 bits (297), Expect = 1e-28
Identities = 53/61 (86%), Positives = 57/61 (93%)
Frame = +3
Query: 510 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 689
++YRGDVVPKDVN A+A IK KRTIQFVDWCPTGFK GINYQPP+VVPGGDLAKVQRAVC
Sbjct: 317 LMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVC 376
Query: 690 M 692
M
Sbjct: 377 M 377
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 83.4 bits (197), Expect = 1e-16
Identities = 34/82 (41%), Positives = 57/82 (69%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 181
SG +LL+ ++ +Y + + F+++P+P+VS VVEPYN+ L+ H +E++D ++DN
Sbjct: 145 SGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Query: 182 EAIYDICRRNLDIERPTYTNLN 247
EA+YDIC R L + PT+ +LN
Sbjct: 205 EALYDICFRTLKLANPTFGDLN 226
Score = 79.4 bits (187), Expect = 2e-15
Identities = 34/79 (43%), Positives = 49/79 (62%)
Frame = +1
Query: 265 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 444
+S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + LSV E+T
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQ 292
Query: 445 CFEPANQMVKCDPRHGKYM 501
++ N M DPRHG+Y+
Sbjct: 293 MWDAKNMMCAADPRHGRYL 311
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 513 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGI 626
++RG + K+V+ + I+ K + FV+W P K +
Sbjct: 316 VFRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSV 353
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 83.4 bits (197), Expect = 1e-16
Identities = 34/82 (41%), Positives = 57/82 (69%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 181
SG +LL+ ++ +Y + + F+++P+P+VS VVEPYN+ L+ H +E++D ++DN
Sbjct: 145 SGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Query: 182 EAIYDICRRNLDIERPTYTNLN 247
EA+YDIC R L + PT+ +LN
Sbjct: 205 EALYDICFRTLKLANPTFGDLN 226
Score = 79.4 bits (187), Expect = 2e-15
Identities = 34/79 (43%), Positives = 49/79 (62%)
Frame = +1
Query: 265 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 444
+S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + LSV E+T
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQ 292
Query: 445 CFEPANQMVKCDPRHGKYM 501
++ N M DPRHG+Y+
Sbjct: 293 MWDAKNMMCAADPRHGRYL 311
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 513 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 644
++RG + K+V+ + ++ K + FV+W P K + PT
Sbjct: 316 VFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIAPT 359
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 82.6 bits (195), Expect = 2e-16
Identities = 34/82 (41%), Positives = 57/82 (69%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 181
SG +LL+ ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DN
Sbjct: 146 SGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 205
Query: 182 EAIYDICRRNLDIERPTYTNLN 247
EA+YDIC R L + P++ +LN
Sbjct: 206 EALYDICFRTLKLSTPSFGDLN 227
Score = 79.4 bits (187), Expect = 2e-15
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = +1
Query: 265 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 444
+S +T SLRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T
Sbjct: 234 MSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQ 293
Query: 445 CFEPANQMVKCDPRHGKYM 501
++ N M DPRHG+Y+
Sbjct: 294 MWDAKNMMCAADPRHGRYL 312
Score = 35.1 bits (77), Expect = 0.045
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 513 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 644
++RG + K+V+ I ++ K + FV+W P K + PPT
Sbjct: 317 MFRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPT 360
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 82.6 bits (195), Expect = 2e-16
Identities = 34/82 (41%), Positives = 57/82 (69%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 181
SG +LL+ ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DN
Sbjct: 146 SGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 205
Query: 182 EAIYDICRRNLDIERPTYTNLN 247
EA+YDIC R L + P++ +LN
Sbjct: 206 EALYDICFRTLKLSTPSFGDLN 227
Score = 79.4 bits (187), Expect = 2e-15
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = +1
Query: 265 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 444
+S +T SLRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T
Sbjct: 234 MSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQ 293
Query: 445 CFEPANQMVKCDPRHGKYM 501
++ N M DPRHG+Y+
Sbjct: 294 MWDSKNMMCAADPRHGRYL 312
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 513 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 641
++RG + K+V+ I I+ K + FV+W P K + PP
Sbjct: 317 IFRGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPP 359
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 82.2 bits (194), Expect = 3e-16
Identities = 34/82 (41%), Positives = 57/82 (69%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 181
SG +LL+ ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DN
Sbjct: 145 SGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Query: 182 EAIYDICRRNLDIERPTYTNLN 247
EA+YDIC R L + P++ +LN
Sbjct: 205 EALYDICFRTLKLTTPSFGDLN 226
Score = 78.6 bits (185), Expect = 4e-15
Identities = 33/79 (41%), Positives = 49/79 (62%)
Frame = +1
Query: 265 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 444
+S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQ 292
Query: 445 CFEPANQMVKCDPRHGKYM 501
++ N M DPRHG+Y+
Sbjct: 293 MWDSKNMMCAADPRHGRYL 311
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 513 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 644
++RG + K+V+ + ++ K + FV+W P K + PPT
Sbjct: 316 MFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT 359
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 82.2 bits (194), Expect = 3e-16
Identities = 34/82 (41%), Positives = 57/82 (69%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 181
SG +LL+ ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DN
Sbjct: 145 SGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Query: 182 EAIYDICRRNLDIERPTYTNLN 247
EA+YDIC R L + P++ +LN
Sbjct: 205 EALYDICFRTLKLTTPSFGDLN 226
Score = 78.6 bits (185), Expect = 4e-15
Identities = 33/79 (41%), Positives = 49/79 (62%)
Frame = +1
Query: 265 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 444
+S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQ 292
Query: 445 CFEPANQMVKCDPRHGKYM 501
++ N M DPRHG+Y+
Sbjct: 293 MWDSKNMMCAADPRHGRYL 311
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 513 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 644
++RG + K+V+ + ++ K + FV+W P K + PPT
Sbjct: 316 MFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT 359
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 82.2 bits (194), Expect = 3e-16
Identities = 34/82 (41%), Positives = 57/82 (69%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 181
SG +LL+ ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DN
Sbjct: 145 SGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Query: 182 EAIYDICRRNLDIERPTYTNLN 247
EA+YDIC R L + P++ +LN
Sbjct: 205 EALYDICFRTLKLTTPSFGDLN 226
Score = 78.2 bits (184), Expect = 5e-15
Identities = 33/79 (41%), Positives = 49/79 (62%)
Frame = +1
Query: 265 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 444
+S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQ 292
Query: 445 CFEPANQMVKCDPRHGKYM 501
++ N M DPRHG+Y+
Sbjct: 293 MWDAKNMMCAADPRHGRYL 311
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 513 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 644
++RG + K+V+ + ++ K + FV+W P K + PPT
Sbjct: 316 MFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT 359
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 82.2 bits (194), Expect = 3e-16
Identities = 34/82 (41%), Positives = 57/82 (69%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 181
SG +LL+ ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DN
Sbjct: 145 SGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Query: 182 EAIYDICRRNLDIERPTYTNLN 247
EA+YDIC R L + P++ +LN
Sbjct: 205 EALYDICFRTLKLTTPSFGDLN 226
Score = 78.2 bits (184), Expect = 5e-15
Identities = 33/79 (41%), Positives = 49/79 (62%)
Frame = +1
Query: 265 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 444
+S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQ 292
Query: 445 CFEPANQMVKCDPRHGKYM 501
++ N M DPRHG+Y+
Sbjct: 293 MWDSKNMMCAADPRHGRYL 311
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 513 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGI 626
++RG + K+V+ + ++ K + FV+W P K +
Sbjct: 316 MFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV 353
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 81.8 bits (193), Expect = 4e-16
Identities = 33/82 (40%), Positives = 57/82 (69%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 181
SG +LL+ ++ +Y + + F+++P+P+VS VVEPYN+ L+ H +E++D ++DN
Sbjct: 145 SGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 204
Query: 182 EAIYDICRRNLDIERPTYTNLN 247
EA+YDIC R L + P++ +LN
Sbjct: 205 EALYDICFRTLKLSTPSFGDLN 226
Score = 78.6 bits (185), Expect = 4e-15
Identities = 33/79 (41%), Positives = 49/79 (62%)
Frame = +1
Query: 265 VSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 444
+S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T
Sbjct: 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRNLTVPELTQQ 292
Query: 445 CFEPANQMVKCDPRHGKYM 501
++ N M DPRHG+Y+
Sbjct: 293 MWDAKNMMCAADPRHGRYL 311
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 513 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 644
++RG + K+V+ + ++ K + FV+W P K + PPT
Sbjct: 316 MFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT 359
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 57.2 bits (132), Expect = 1e-08
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAP-QVSTAVVEPYNSILTTHTTLEHSDCAFMVD 178
SG S L+E L+ Y KK ++++P + S VV+PYNS+LT ++DC ++D
Sbjct: 147 SGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLD 206
Query: 179 NEAIYDICRRNLDIERPTYTNLN 247
N A+ I L + PT+ N
Sbjct: 207 NTALNRIAVERLHLTNPTFAQTN 229
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +1
Query: 226 PNLHQPESSHGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-ISAEK 402
P Q S ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ + +
Sbjct: 223 PTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQA 282
Query: 403 AYHEQLSVAEITNACFEPANQMVKCDPRH 489
+ +V ++ + N MV R+
Sbjct: 283 NVIRKTTVLDVMRRLLQTKNIMVSSYARN 311
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/48 (27%), Positives = 29/48 (60%)
Frame = +3
Query: 504 LLMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 647
+L + +G+V P V+ ++ I+ ++ + F+DW P +V ++ + P V
Sbjct: 322 ILNIIQGEVDPTQVHESLQRIRERKLVNFIDWGPASIQVALSKKSPYV 369
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +2
Query: 2 SGFTSLLMERLSVDYGKKSKLEFAIYPAP-QVSTAVVEPYNSILTTHTTLEHSDCAFMVD 178
SG S L+E L+ Y KK ++++P + S VV+PYNS+LT ++DC ++D
Sbjct: 147 SGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLD 206
Query: 179 NEAIYDICRRNLDIERPTYTNLN 247
N A+ I L + PT+ N
Sbjct: 207 NTALGRIAVERLHLTNPTFAQTN 229
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +1
Query: 226 PNLHQPESSHGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-ISAEK 402
P Q S ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ + +
Sbjct: 223 PTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQA 282
Query: 403 AYHEQLSVAEITNACFEPANQMVKCDPRH 489
+ +V ++ + N MV R+
Sbjct: 283 NVIRKTTVLDVMRRLLQTKNIMVSSYARN 311
Score = 35.5 bits (78), Expect = 0.034
Identities = 12/48 (25%), Positives = 29/48 (60%)
Frame = +3
Query: 504 LLMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 647
+L + +G+V P V+ ++ I+ ++ + F++W P +V ++ + P V
Sbjct: 322 ILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSKKSPYV 369
>At1g70140.1 68414.m08071 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 760
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +3
Query: 270 LDHCFFEIRRRSECGPHRVPD*LGALPPYPLPTGHVRASHLCREG 404
L C RRR GP RV + L PP P+ + V + L REG
Sbjct: 97 LQRCIIARRRRDRVGPVRVENTLPPYPPPPMTSAAVTTTTLAREG 141
>At1g01190.1 68414.m00032 cytochrome P450, putative similar to
cytochrome P450 SP:O48927 from [Glycine max]
Length = 535
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1
Query: 304 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 444
+++D NL+P PR FPLV + S+ A+ SVAE++NA
Sbjct: 62 ISLDYNRKYKNLIPGPR-GFPLVGSMSLRSSHVAHQRIASVAEMSNA 107
>At1g29200.1 68414.m03573 hypothetical protein contains Pfam
PF03138: Plant protein family. The function of this
family of plant proteins is unknown;
Length = 698
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 635 LVVDTDLETGWTPVDELDSTLGFDGSDGRVHILGY 531
LV DT+L TPVD ++ L G VH+ GY
Sbjct: 360 LVTDTELVKEATPVDYIEHVLPLLKKYGMVHLFGY 394
>At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identical
to endo-polygalacturonase [Arabidopsis thaliana]
GI:2597824
Length = 431
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -3
Query: 220 NVEITA---ADVIDGFIVDHESTVRVLKGCVGGEDRVVGLDDGSGNLR 86
NVEITA + DG + + +RV +G D + ++DG+ NL+
Sbjct: 230 NVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDGTQNLQ 277
>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 587
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 501 GLLMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT-GFKVGINYQPPTVVPGGD 662
G L +G V D A T TK+ + DW P+ FK PP ++P D
Sbjct: 302 GSLPTLQGVAVSSDKGAEANTTSTKKKVSSDDWEPSEPFKASFTI-PPYILPSSD 355
>At2g15020.1 68415.m01710 expressed protein and genefinder
Length = 526
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 298 GALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 474
G N+ L +F ++L+P + F T A + K Y LS+ N+ E N++VK
Sbjct: 212 GLGNLGLKQFSSSLMPRHSLGFSYATEAHGLWILKGYFPILSMNVTNNSSNEVHNKIVK 270
>At1g68080.1 68414.m07777 expressed protein
Length = 383
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 593 DELDSTLGFDGSDGRVHILGYDVTTVQ 513
D + +GFD R+H+LG+DV ++Q
Sbjct: 211 DGSNQNIGFDVCVARLHLLGFDVHSLQ 237
>At1g62870.1 68414.m07099 expressed protein
Length = 796
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +2
Query: 329 RLTWCLTPVSTSHWSRTRQSSLPRR--PTMNSFPSPRSQTHASSPP 460
R + C S S+ SRT L R P NS P P S S PP
Sbjct: 80 RCSLCDAVFSASNPSRTASEHLKRGTCPNFNSLPKPISTISPSPPP 125
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 1287
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Frame = +2
Query: 38 VDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSD------CAFMVDNEAIYDI 199
+D+ + F P VS A V+PYNS +H D C+F DN+ ++
Sbjct: 285 IDFSSARGISFKFESNPSVSPACVKPYNS-FDSHLADSDLDRPNNYSCSFQ-DNKTVHVK 342
Query: 200 CRRNLDIERPTYTNL 244
+ + E+ Y+++
Sbjct: 343 VKPEAESEKVVYSSV 357
>At3g01770.1 68416.m00116 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 620
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 178 VDHESTVRVLKGCVGGEDRVVGLDDGSGNLRRGVDG 71
+ H STVR K VGG +++ G +L G DG
Sbjct: 394 ISHISTVRTEKDSVGGLNQMEDASRGKLSLIEGADG 429
>At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family
protein
Length = 242
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 314 TSPSSR-LTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVM 490
T P+S TW + + ++S T +SLP+ +N + + A+SPP++ PV
Sbjct: 82 TKPNSTSFTWYPSRTGSYYFSFTNNTSLPKTCQLNQKLTVQVILAAASPPSQPPATAPVP 141
Query: 491 AS 496
S
Sbjct: 142 VS 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,684,348
Number of Sequences: 28952
Number of extensions: 380238
Number of successful extensions: 1347
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -