Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0967
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 29 0.44
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 27 1.8
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 4.1
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.4
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 7.1
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 7.1
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 25 7.1
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 9.4
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 9.4
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 25 9.4
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.44
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 20 PTTTTFQLLPVSMENSTILHTVALSLDLPVAVSPVKYLMFTLLL 151
P+ T +L ++IL T+ SL + VSP Y +FT LL
Sbjct: 89 PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLL 132
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 530 FGKSNANDIYPVVLTSISSFTEWILQN 610
FG S AN + PV L S SFT +++++
Sbjct: 243 FGNSFANGLPPVFLNSSRSFTSYLVKS 269
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 141 VNIRYFTGLTATGRSSDNATVCRIVEFSME 52
+N+ Y + L+ATG S + TV I E + E
Sbjct: 94 INVEYQSNLSATGESVNTTTVSAINEDTRE 123
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 30 LPFNCYLFPWRILRSCIPSHYRWIFP 107
LP + + F W +C P H WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -2
Query: 534 PKDTMPTSAFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDH 406
P + S + + H S+Y R+R PG N QS H
Sbjct: 195 PSRSQNNSHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/68 (22%), Positives = 28/68 (41%)
Frame = -3
Query: 575 W*VLRGRCHWHCSFQKIRCLLALLEEGRGTQVSIVVVAATSPDQTGAEFVISHDAIMTLV 396
W V+ GRC W CS + + S+ +S Q+ A +S ++ +
Sbjct: 406 WEVMTGRCVWKCSLDSFGNAHNIDSDEDAVNESLSHSTKSSIIQSLAWGPLSDSPVLAVA 465
Query: 395 LFPAVFFV 372
+ V+F+
Sbjct: 466 VDETVYFI 473
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 524 VSFGKSNANDIYPVVLTSISSFTEWILQN 610
+SF K D YP + + FT+ ++QN
Sbjct: 122 ISFSKPKTVDNYPEYIQHLPGFTKKVVQN 150
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 217 WHVLLVRCSHPCRNSPQRIRDG*QQSEHKIFH 122
W +LLV + C NS +R+G Q +IF+
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFN 1055
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 17 SPTTTTFQLLPVSMENSTI--LHTVALSLDLPVAVSPVKYLMFTLLLTIPNSLRRITTRM 190
S T LLP++ I ++TV LSL + S V+ L+F +L + + +T ++
Sbjct: 298 STKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTLVNELTLKL 357
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 267 RHLVDNSTLLDVWAEVDGMCYSYDAHILVVILLREF-GMVNSKVNIR 130
+H + DVW E+D + S + + ++ L F + N K+N +
Sbjct: 404 KHQYYDEEFADVWREIDTLANSETSSAIQMVALTAFHKLQNEKLNTK 450
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,190
Number of Sequences: 5004
Number of extensions: 64609
Number of successful extensions: 194
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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