Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0967
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1234 - 35127322-35128378,35128423-35128467,35130016-351302... 31 0.79
12_02_0062 - 13084207-13084800 30 1.8
07_03_0614 - 19974200-19975426 30 1.8
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972... 29 2.4
10_01_0097 - 1171949-1172047,1172520-1172591,1172791-1172949,117... 29 2.4
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415... 29 3.2
12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179 29 4.2
05_04_0191 + 18927302-18927707,18928747-18928979,18929062-189291... 28 5.6
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927 28 7.4
01_06_1014 - 33810112-33811995 27 9.7
>02_05_1234 -
35127322-35128378,35128423-35128467,35130016-35130275,
35130610-35131365,35132115-35132122,35133559-35134327
Length = 964
Score = 31.1 bits (67), Expect = 0.79
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Frame = +3
Query: 132 LCSLCC*PS-RIL*GELRQGCEHRTSNT--CHPLRPKHPAGCYYQQGVVIPQGI--FVDL 296
LC+ CC P R + G L + R + T C P G Y + G ++P+GI DL
Sbjct: 643 LCATCCLPLLRDIDGPLHKALTRRDACTFACCVKFPSLMRGVYEENGTMVPKGIRNLKDL 702
Query: 297 -------LGWGTTVQGGSVSDGNLHKLELIVTNKENCR 389
+G G + LHKL + NK+N R
Sbjct: 703 YTLRDVNIGRGNAILRDIGMLTGLHKLGVAGINKKNGR 740
>12_02_0062 - 13084207-13084800
Length = 197
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 307 PHPSRSTKIPWGITTPC***HPAGCLGRSGW 215
P P +T PWG+ C HP G GW
Sbjct: 164 PDPEATTSEPWGLRFACANDHPLPAPGSCGW 194
>07_03_0614 - 19974200-19975426
Length = 408
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 307 PHPSRSTKIPWGITTPC***HPAGCLGRSGW 215
P P +T PWG+ C HP G GW
Sbjct: 375 PDPEATTSEPWGLRFACASDHPLPAPGSCGW 405
>11_04_0454 -
17895935-17896093,17896878-17896911,17897114-17897252,
17897487-17897561,17897666-17897945
Length = 228
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 501 RRQGHPSQYCRSRGHQPGPNRR 436
RR+ H ++ R RG QP PNRR
Sbjct: 27 RRRRHHQRHRRRRGGQPAPNRR 48
>10_01_0097 - 1171949-1172047,1172520-1172591,1172791-1172949,
1172998-1173381,1173478-1175253,1175329-1175452,
1176859-1177027,1177131-1177226,1177339-1177527,
1177965-1179303
Length = 1468
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 231 KHPAGCYYQQGVVIPQGIFVDLLGWGTTVQGGSVSDGNLHKLELIVTNKENCRE 392
K P YY+ ++ P IF D+ + +GGS S N+H+ + ++ EN ++
Sbjct: 1089 KLPDEAYYRDALMAPY-IFYDISHGRESHRGGSSSYQNVHEAQFVLRLYENLQK 1141
>06_01_0580 +
4148969-4149101,4149394-4149546,4149682-4150095,
4150218-4150294,4151479-4152699,4153057-4153128
Length = 689
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 379 SLLVTMSSSLWRLPSDTLPP*TVVPHPSRSTKIPWGITTP 260
SL T+SS+L R+PS +LPP ++ +P I P
Sbjct: 394 SLTNTLSSTLQRVPSSSLPPQELLECKQAKVSMPPSIRIP 433
>12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179
Length = 312
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 346 RLPSDTLPP*TVVPH-PSRSTKIPWGITTPC***HPAGC 233
+LPS +LPP PH P ST + T+PC P C
Sbjct: 6 KLPSPSLPPSRSSPHVPPCSTLLHQAPTSPCQAPRPTSC 44
>05_04_0191 +
18927302-18927707,18928747-18928979,18929062-18929127,
18929262-18929340,18929935-18930014,18930099-18930122,
18930254-18930375,18930902-18931109,18931960-18932006,
18932914-18932998,18933292-18933355,18933488-18933609
Length = 511
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 569 VLRGRCHWHCSFQKIRCLLALLEEGRGTQVSIVVVAATSPDQTGAEFVI 423
V R RC+W SF+ + ++ E+GRG + V A + GA +I
Sbjct: 333 VERRRCYWGYSFENLATENSIDEDGRGIDAN-VEFCAVIKTKLGAHRII 380
>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
Length = 229
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 293 SARMGNYRSRRQCI*RQPPQARTHCDQQRKLQG 391
SAR R I +PP R HC+++R+++G
Sbjct: 86 SARNCRRRRHHPRIRLRPPPTRRHCEREREMRG 118
>01_06_1014 - 33810112-33811995
Length = 627
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +3
Query: 246 CYYQQGVVIPQGIFVDLLGWGTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTD 425
CY +G+ G+ +L V GGS S+ N EL+ K N Y G VT
Sbjct: 415 CYLLEGMPRGIGLLTELQVLKGFVIGGSTSNYNCRVAELVRLEKLNKLSVYIGSKVAVTG 474
Query: 426 NK 431
++
Sbjct: 475 DE 476
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,797,330
Number of Sequences: 37544
Number of extensions: 465878
Number of successful extensions: 1269
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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