Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0967
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    30   1.6  
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   2.1  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   2.1  
AF003134-4|AAB54145.2|  395|Caenorhabditis elegans Hypothetical ...    29   2.8  
U41270-1|AAA82439.2|  411|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +3

Query: 300 GWGTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNT 479
           GWG+T++G S+S   L ++ + + +   C        R+   +  CAG    G  D    
Sbjct: 181 GWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAG-YSYGKIDSCQG 239

Query: 480 DLGAP 494
           D G P
Sbjct: 240 DSGGP 244


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 495 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 391
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 221 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 495 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 391
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 340 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373


>AF003134-4|AAB54145.2|  395|Caenorhabditis elegans Hypothetical
           protein ZC581.7 protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 494 CLLPKALVGIVSFGKSNANDIYPVVLTSISSFTEWILQNV 613
           CL+ K +V I  FG   A  IY V L   ++ T W+   V
Sbjct: 249 CLIHKEIVKIADFGMCRATSIYKVDLNKPTN-TRWLAPEV 287


>U41270-1|AAA82439.2|  411|Caenorhabditis elegans Hypothetical
           protein AH9.1 protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -2

Query: 282 YPGVLRHLVDNSTLLDVWAEVDGMCYSYDAHILVVILLREFGMVNSKVNI 133
           Y   L H    +T LD   E++ +   Y AH++V+ ++   GM+N  +N+
Sbjct: 31  YNAGLVHFFFRTTSLDDSPEMNHV--DYVAHVIVMPIVLSIGMINQCLNV 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,369,482
Number of Sequences: 27780
Number of extensions: 380043
Number of successful extensions: 1097
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)