Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0967
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61600.1 68414.m06941 expressed protein                             30   1.5  
At5g25170.1 68418.m02984 expressed protein                             29   2.7  
At1g11220.1 68414.m01285 expressed protein contains similarity t...    29   2.7  
At4g16080.1 68417.m02438 hypothetical protein contains Pfam prof...    29   3.5  
At5g25830.1 68418.m03065 zinc finger (GATA type) family protein ...    28   6.1  
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl...    27   8.1  
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl...    27   8.1  

>At1g61600.1 68414.m06941 expressed protein 
          Length = 421

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
 Frame = +3

Query: 180 RQGCEHRTSNTCHPLRPKHPAGCYYQQGVVIPQGIFVDLLGWGTTVQGGSVSDGNLHKLE 359
           ++G E RTS + HP RP+   G   +    +P   F       +T++ GSV  G  +   
Sbjct: 172 KKGWELRTSRSLHPRRPREALGLDEELRARLPAFGFP-----VSTIRSGSVIVGEWYCPF 226

Query: 360 LIVTNKENC---REQYKGHDRVVTDNKFCAGLVRAGGRDYDNTD 482
           + V  KENC   ++  K     +T +++   +   G  D D  +
Sbjct: 227 MFV--KENCSVSQQMRKSMFYRITLSQYWERIYHCGNNDLDENN 268


>At5g25170.1 68418.m02984 expressed protein
          Length = 218

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 428 QILRRFGPGWWPRLRQY*LGCPCLLPKAL 514
           Q+ RR  P W  RL ++ L C C+LP  L
Sbjct: 127 QLTRRSIPSWVNRLARFGLFCNCVLPAEL 155


>At1g11220.1 68414.m01285 expressed protein contains similarity to
           cotton fiber expressed protein 1 [Gossypium hirsutum]
           gi|3264828|gb|AAC33276
          Length = 310

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 406 MIAS*LITNSAPVWSGLVAATTTILTWVPLPSSKSASRHRIFW 534
           M++S +   +A + +G+VA +  + + VP+    S SR  IFW
Sbjct: 1   MVSSMISIKAALITAGIVAVSLFLKSSVPIAVDFSVSRFPIFW 43


>At4g16080.1 68417.m02438 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 379

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 403 PLYCSLQFSLLVTMSSSLWRLPSDTL 326
           P Y  L FS+LVT  +SLW L  D +
Sbjct: 212 PQYHELNFSILVTGHTSLWSLLQDNV 237


>At5g25830.1 68418.m03065 zinc finger (GATA type) family protein
           GATA transcription factor, Arabidopsis thaliana,
           PIR:T05288
          Length = 331

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 243 GCYYQQGVVIPQGIFVDLLGWGTTVQGGSVSDGNLHKLELI 365
           G  +   + IP     D L W + +   S+S  ++HKLELI
Sbjct: 64  GTSFSGDLCIPSDDLADELEWLSNIVDESLSPEDVHKLELI 104


>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 264 HLVDNSTLLDVWAEVDGMCYSYDAHILV 181
           ++V +  +LD+W  V+ +C+  D+ + V
Sbjct: 69  NIVPSKEILDLWRSVEAVCFDVDSTVCV 96


>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 264 HLVDNSTLLDVWAEVDGMCYSYDAHILV 181
           ++V +  +LD+W  V+ +C+  D+ + V
Sbjct: 69  NIVPSKEILDLWRSVEAVCFDVDSTVCV 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,426,503
Number of Sequences: 28952
Number of extensions: 351184
Number of successful extensions: 946
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)