Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0965
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 158 5e-40
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 84 2e-17
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 70 2e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 57 2e-09
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 56 5e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 50 3e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 49 6e-07
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 44 2e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 33 0.024
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 28 0.89
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 28 1.2
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 27 2.7
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 26 4.8
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 4.8
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar... 25 6.3
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 25 8.3
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 25 8.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 158 bits (384), Expect = 5e-40
Identities = 72/84 (85%), Positives = 77/84 (91%)
Frame = +3
Query: 3 EALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 182
EALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI
Sbjct: 259 EALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQ 318
Query: 183 ALAPSTMKIKIIAPPERKYSVWIG 254
ALAPS+MK+KI+APPERKYSVWIG
Sbjct: 319 ALAPSSMKVKIVAPPERKYSVWIG 342
Score = 67.7 bits (158), Expect = 1e-12
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +2
Query: 257 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 352
SILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 344 SILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 83.8 bits (198), Expect = 2e-17
Identities = 35/84 (41%), Positives = 54/84 (64%)
Frame = +3
Query: 3 EALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 182
E LF P +G EA+G+H + SI+ D+D+R LY+N VLSGG+T+ G +R E+
Sbjct: 264 EVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELR 323
Query: 183 ALAPSTMKIKIIAPPERKYSVWIG 254
A++ ++KI A PER ++ W+G
Sbjct: 324 AISGKKNQVKIYASPERMHNAWLG 347
Score = 30.3 bits (65), Expect = 0.22
Identities = 14/32 (43%), Positives = 25/32 (78%)
Frame = +2
Query: 257 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 352
SILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 349 SILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 70.1 bits (164), Expect = 2e-13
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 11/95 (11%)
Frame = +3
Query: 3 EALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 182
E LFQP +G E G+ E +++I DVDIRK LY VLSGG++MY G+ R++KEI
Sbjct: 259 ECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIK 318
Query: 183 AL--------APSTM---KIKIIAPPERKYSVWIG 254
L P+ + K+KI P R+++V+IG
Sbjct: 319 QLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIG 353
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 56.8 bits (131), Expect = 2e-09
Identities = 22/49 (44%), Positives = 35/49 (71%)
Frame = +3
Query: 45 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALA 191
G+HE Y SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLA 371
Score = 41.1 bits (92), Expect = 1e-04
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +2
Query: 257 SILASLSTFQQMWISKQEYDESG 325
SILASL FQ +W+SKQEYDE G
Sbjct: 396 SILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 55.6 bits (128), Expect = 5e-09
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Frame = +3
Query: 45 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 224
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 225 ---PERKYSVWIG 254
ER Y+ W+G
Sbjct: 385 GHVVERSYASWLG 397
Score = 41.1 bits (92), Expect = 1e-04
Identities = 17/34 (50%), Positives = 26/34 (76%), Gaps = 3/34 (8%)
Frame = +2
Query: 257 SILASLSTFQQMWISKQEYDESGP---SIVHRKC 349
SIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 399 SILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 50.0 bits (114), Expect = 3e-07
Identities = 24/76 (31%), Positives = 38/76 (50%)
Frame = +3
Query: 3 EALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 182
E LF PS + + GI E S+ +I+ L N V GG +PG R+ E+
Sbjct: 285 ELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELR 344
Query: 183 ALAPSTMKIKIIAPPE 230
+LAP+ ++K+ P +
Sbjct: 345 SLAPANWEVKVFEPSD 360
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 48.8 bits (111), Expect = 6e-07
Identities = 21/84 (25%), Positives = 44/84 (52%)
Frame = +3
Query: 3 EALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 182
E +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R+++E+T
Sbjct: 600 EVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELT 659
Query: 183 ALAPSTMKIKIIAPPERKYSVWIG 254
++ P I + W G
Sbjct: 660 SIMPVGSSINVFRASNPLLDAWKG 683
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 3 EALFQPSFLGME-ANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 179
E F P + + E N + +D+RK LY N VLSGG+T++ +R+Q+++
Sbjct: 291 EIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDL 350
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 33.5 bits (73), Expect = 0.024
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +3
Query: 99 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIG 254
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKG 581
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 28.3 bits (60), Expect = 0.89
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +3
Query: 195 STMKIKIIAPPERKYSVWIGDRSSPPSLPSNRCGSRNRSTTSLVPPLYTGSAS 353
S+ + ++ P K S + + +P + STT + PPL T S+S
Sbjct: 4 SSPSVSLLHSPVEKLSAQLEKTTLLQDIPPGSLSENDNSTTFIKPPLETASSS 56
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.9 bits (59), Expect = 1.2
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 4/148 (2%)
Frame = +3
Query: 63 YNSIMKCDVDIRKDLYANTV-LSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKY 239
+N ++ ++D Y + ++ G T+ IADR+Q + P +++ + +Y
Sbjct: 289 WNKFLEKEIDPSFIKYCTKLEVTAGCTLISYIADRLQNSHPNIQPP-IRVSL-----NEY 342
Query: 240 SVWIGDRSSPPSLPSNRCGSRNRSTTSLVPPL---YTGSASKR*DFKL*CPTAEPQEGGS 410
+ IG+ S+ L +NR T SL+ + T S S+ +L P+ E
Sbjct: 343 MI-IGE-SAMKGLEIRSSLYQNRYTGSLLHAINKTVTKSGSRLLTRRLCAPSTNIVE--I 398
Query: 411 NYACDLVNKFSI*CRL*GIVICILRKTN 494
N DLV KF + L VI +L+K+N
Sbjct: 399 NNRLDLVEKFKLLPELCSKVINLLKKSN 426
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 2.7
Identities = 23/97 (23%), Positives = 38/97 (39%)
Frame = +3
Query: 33 MEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIK 212
++ NGI ++ V R D + +S P IA +Q+EI S + +
Sbjct: 127 LKLNGIVVLVFSKQKGITVVFRNDPLESVRVSSSFDSIPAIARFLQREIEVQLVSLFQEE 186
Query: 213 IIAPPERKYSVWIGDRSSPPSLPSNRCGSRNRSTTSL 323
+ + + +W S S S N+S TSL
Sbjct: 187 LPSIIYKMSRIWFAKSDSNLSFQKIPFTSPNQSHTSL 223
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 25.8 bits (54), Expect = 4.8
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 241 PYGSVIDPRLPLYLPTDVD-LETGVRRVWSLHCTQEVLLSVETLSYDALQQNLKR 402
P VIDP P+ +P D L GV L + + S++ L D LKR
Sbjct: 141 PGARVIDPDAPIVIPADGKILNYGVIEGGQLEQVKGITYSLDALLGDEKLARLKR 195
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 4.8
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = +3
Query: 81 CDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGDR 260
CD+D ++ + + T ++P AD I ++K A RKYS D
Sbjct: 175 CDLD---PIFKSLAFTDDTNLFPAFADSEAALIMLKKREMTRVKHRAGRPRKYSYVNKDL 231
Query: 261 SSPPSLPSNR 290
+ LP R
Sbjct: 232 NFEEGLPRRR 241
>SPAC6G9.03c |mug183||histone chaperone
Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 159 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGDRSSPPSLP 281
DR+Q E+ L + + AP +K V+I + +LP
Sbjct: 42 DRVQHELGQLVYGVLNLSFQAPMRKKLDVYIYENGIAVTLP 82
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +3
Query: 243 VWIGDRSSPPSLPSNRCGSRNRSTTSLVPPL 335
+W + P S+P+ CG++ + ++P L
Sbjct: 190 LWCNNECIPSSIPNCACGAKRQLEFQILPTL 220
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 25.0 bits (52), Expect = 8.3
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -1
Query: 76 MMELYVVSWMPLASIPKNEGW 14
+ ++ V+W PL S+P + W
Sbjct: 141 LCRIHSVAWSPLVSLPSSSPW 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,699
Number of Sequences: 5004
Number of extensions: 50604
Number of successful extensions: 149
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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