Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0964
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    23   3.1  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   3.1  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    22   5.3  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   5.3  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -1

Query: 381 GLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSN 277
           G R       +GD  G  S VD QN+  E S   N
Sbjct: 74  GKRSKRSKRPNGDTNGDTSQVDDQNESLEASVNEN 108


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 120 SDRYKVVDDGSRSATPGLTRPLVGP 46
           ++ Y++ +DGSR      +R L GP
Sbjct: 614 AELYQIQEDGSRGVIAFASRSLRGP 638


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 114 YRCRTCHHR*VRAHFRRT 167
           + C+ CH R  R H  +T
Sbjct: 10  FECQECHKRFTRDHHLKT 27


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 114 YRCRTCHHR*VRAHFRRT 167
           + C+ CH R  R H  +T
Sbjct: 163 FECQECHKRFTRDHHLKT 180


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,231
Number of Sequences: 336
Number of extensions: 2488
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)