Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0964
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   3.3  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   4.4  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.8  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   5.8  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   7.7  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
 Frame = -1

Query: 540 QEE*QRVRE*WSRDDHLLGSNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNGI 361
           ++E   +R  ++ D+    S+ SN S  + + DGA+   +G+ +DF  V+    + +N  
Sbjct: 323 RDEVDSLRPQFNVDEQSSISHSSNAS--ENIVDGAVTQANGIESDFTRVDHEPIIVNNDD 380

Query: 360 DTGSG----------DNRGRASLVDVQNDL---HERSAVSNGGK 268
           + G+           DN  R  + + QN +    ER+AV+   +
Sbjct: 381 ENGNNESENEEVIEEDNLNRNVIAEAQNQVVADEERNAVARAAQ 424


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 504 RDDHLLGSNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHG 379
           R D+L      N+   DRLG G I     ++ D  F+ D  G
Sbjct: 176 RQDYLHAILSQNIGYFDRLGAGEITTR--ITTDTNFIQDGLG 215


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 477 GSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRD 370
           GSNV +++  GD + D N  ++++   + DN GL D
Sbjct: 246 GSNVDDVEDSGDSSSDKN-SINHE---IRDNEGLED 277


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 87  CSHHRRLCTYRCRTCH 134
           CSH+ R C  +C  CH
Sbjct: 142 CSHYMRNCKVQCFDCH 157


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 262 PPLAPVADSTPLVQIILNINQASSAPIVPGP 354
           PP+APVA   P V     +     AP VP P
Sbjct: 607 PPVAPVAPEVPSVPQRPAVPVVPEAPSVPQP 637


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,988
Number of Sequences: 5004
Number of extensions: 39805
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)