Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0964
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0014 - 31012116-31012229,31012773-31012985,31013058-310131... 31 0.64
04_01_0460 + 5954548-5954816,5954940-5954997 31 1.1
03_04_0195 - 18356157-18356741 29 2.6
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 29 2.6
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 29 3.4
03_05_0346 + 23335753-23335854,23336268-23336473,23336530-233367... 29 3.4
03_05_0115 - 20973942-20974292,20974571-20974689,20974771-20974894 29 4.5
01_03_0124 + 12734846-12735356,12735449-12736041 29 4.5
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 28 6.0
03_06_0754 - 36025579-36027000 28 6.0
02_05_0980 - 33271879-33271934,33272031-33272100,33272194-332723... 28 6.0
01_06_0644 + 30821811-30821855,30822707-30822976,30823079-308243... 28 6.0
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697... 28 7.9
04_01_0229 - 2897484-2900402 28 7.9
01_06_0926 + 33075575-33076618 28 7.9
>03_06_0014 -
31012116-31012229,31012773-31012985,31013058-31013171,
31013909-31014040,31014624-31014692,31014763-31015017,
31015347-31015520,31016104-31016280,31016999-31017107,
31017343-31017506,31018221-31018517
Length = 605
Score = 31.5 bits (68), Expect = 0.64
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 8/129 (6%)
Frame = -1
Query: 447 GDGAIDNNHGLSNDFGFVNDNHGLRDNG-----IDTGSGDNRGRASLV-DVQNDLHERSA 286
GDG + L++ V + +GL DNG + G G+++G + + +++ D H+
Sbjct: 66 GDGGQLQDRRLASPAAEVVEEYGLEDNGHGGDQWEEGQGESQGSSGMAQEIEGDSHD--- 122
Query: 285 VSNGGKRRVVSIAG--PTEIGTLSSTMAGPTEIGSNSCDNGRSDGSGLELIYDGRSDSDR 112
V G + V + G E G + T+ T N D+ E+++D D+D
Sbjct: 123 VELGNQSTQVHMKGVNTAEGGHVKRTITSETRSTENEEDH--------EVLHDAFDDNDE 174
Query: 111 YKVVDDGSR 85
+ GSR
Sbjct: 175 DGLAPYGSR 183
>04_01_0460 + 5954548-5954816,5954940-5954997
Length = 108
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 507 SRDDHLLGSNGSNVSNLDRLGDG-AIDNNHGLSNDFGFVNDNHGLRDNGIDTGSGD 343
+ D+ GS + + +G G ++DN+H + D NHG D G TG+GD
Sbjct: 34 AEQDNTGGSTSAKHTLPQAVGSGTSVDNHHAIPRD---QYSNHGGDDGGGSTGTGD 86
>03_04_0195 - 18356157-18356741
Length = 194
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 64 GKSRRCRPAPIIDDFVPIAVGPAIIDEFEPTSVGP 168
G S RPA + DD A A+ + +P +VGP
Sbjct: 58 GTSLLARPAVVFDDIAAAAASVAVAEVAKPRAVGP 92
>01_05_0195 - 19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 375 RDNGIDTGSGDNRGRASLVDVQNDLHERSAVSN 277
R G G G RGR++L + D HE SA+S+
Sbjct: 1038 RGGGGRRGRGRGRGRSALAENDMDFHETSALSS 1070
>04_04_0965 -
29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Frame = -1
Query: 420 GLSNDFGFVNDNHGLRDNG---IDTGSGDNRGRASLVDVQNDLHERSAVSNGGKRRVVSI 250
GL FG +N G G + + GD G L V E GG R ++S
Sbjct: 386 GLGKVFGGPRENLGAGGGGDCTLVSAIGDGGGGVGLGKVFGGPSENLGAGGGGDRTLISA 445
Query: 249 AGPTEIGT-LSSTMAGPTE-IGSN 184
G G L + GP E +GS+
Sbjct: 446 VGADGGGVGLGNVFGGPRENLGSD 469
>03_05_0346 +
23335753-23335854,23336268-23336473,23336530-23336705,
23336832-23337064,23337546-23337963,23338045-23338262,
23338905-23339168
Length = 538
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -1
Query: 351 SGDNRGRASLVDVQNDLHERSAVSNGGKRRVVSIAGPTEIGTLSSTMAGPTEIGSNSC 178
SG A +DV + H+ + S+GG+R S +G + ++ +A G + C
Sbjct: 106 SGVQERNADPIDVSSSTHDDTVQSSGGERFARSESGSDSQHSKTAKLAATCSSGGSEC 163
>03_05_0115 - 20973942-20974292,20974571-20974689,20974771-20974894
Length = 197
Score = 28.7 bits (61), Expect = 4.5
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = -1
Query: 396 VNDNHGLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSNGGKRRVVSIAGPTEIGTLSS 217
VND +N TG + D Q+ + GKR+ +I ++ S
Sbjct: 94 VNDVVADNENEFITGIVPLSNELAEHDPQDGASQGETSQAQGKRKRHVRPKKKKIRSVHS 153
Query: 216 TMAGPT-EIGSNSCDNGRSDGSGLELIYDGRSDSDR 112
M T + G +S D+ DG+G + +G SDSD+
Sbjct: 154 LMNDVTMQPGPSSSDSEDGDGNGAGDVSEGSSDSDK 189
>01_03_0124 + 12734846-12735356,12735449-12736041
Length = 367
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 237 EIGTLSSTMAGPTEIGSNSCDNGRSDGS-GLELIYDGRSDSDRY 109
E+ +LS + + GSN C GRSD + GL G + +RY
Sbjct: 192 ELVSLSEQVMVDCDTGSNGCGGGRSDTALGLVASRGGVTSEERY 235
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 28.3 bits (60), Expect = 6.0
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 9/146 (6%)
Frame = -1
Query: 486 GSNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNGIDTGS--GDNRGRASLVDV 313
GS S S G++ + G S+ G ++G G +GS G N S+
Sbjct: 259 GSGSSASSGYGGSSSGSMSGS-GSSSSSGSTGMSYGSSGAGSFSGSSSGSNSNAGSMSGA 317
Query: 312 QNDLHERSAV--SNGGKRRVVSIAGPTEIGTLSSTMAGPTEIG-----SNSCDNGRSDGS 154
+ S+ ++G +S +G + G++S++ +G + G S+S +G + GS
Sbjct: 318 NSGAGSSSSAYGASGSGSNSMSDSGSSS-GSVSASGSGSSNSGAGSGSSSSSWSGSNSGS 376
Query: 153 GLELIYDGRSDSDRYKVVDDGSRSAT 76
G D S + + S SAT
Sbjct: 377 GTMSGIDAPSSTGTSSTAESNSGSAT 402
>03_06_0754 - 36025579-36027000
Length = 473
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 87 CSHHRRLCTYRCRTCHH 137
C H+ + T R RTCHH
Sbjct: 453 CRFHKEITTCRTRTCHH 469
>02_05_0980 -
33271879-33271934,33272031-33272100,33272194-33272355,
33272787-33272895,33273350-33273608,33274193-33274272,
33274370-33274499,33274676-33274793,33275222-33275302,
33275510-33275827,33277490-33277741
Length = 544
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 264 RVVSIAGPTEIGTLSSTMAGPTEIGSNSCDNGRSDGSGLELIYD 133
R +IAGP L + A PT S+SC G D + L+ I D
Sbjct: 57 RTTTIAGPPRY--LFNAQAQPTRPRSSSCQVGADDTATLDKIID 98
>01_06_0644 +
30821811-30821855,30822707-30822976,30823079-30824383,
30824551-30824692,30824752-30825275
Length = 761
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 375 RDNGIDTGSGDNRGRASLVDVQNDLHERSAVSN 277
R G G G RGR++L + D HE SA S+
Sbjct: 25 RGGGGRRGRGRGRGRSALAENDMDFHETSAPSS 57
>09_06_0020 - 20267190-20267612,20269086-20269495,20269573-20269747,
20270833-20271066,20271164-20271265,20271354-20272091,
20272204-20272321,20272417-20272667,20272768-20272932
Length = 871
Score = 27.9 bits (59), Expect = 7.9
Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 6/130 (4%)
Frame = -1
Query: 522 VRE*WSRDDHLLGSNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNGIDTGSGD 343
+R+ R D + +NG + +D + G +HG + N G ++N +
Sbjct: 691 LRDEQRRGDWDILANGEAMQEMDHIAKG---QHHGNAVSLLRPNATSGNQNNMLILQETC 747
Query: 342 NRGRASLVDVQN-DLHERSAVSNGGKRRVVSIAGPTEIGTL-----SSTMAGPTEIGSNS 181
SLV D+ V NGG VS+ P+ L + P E+GS +
Sbjct: 748 TDSSGSLVVYAPVDVQSMHVVMNGGDSAYVSLL-PSGFAILPDGHNNGASPSPAEVGSGA 806
Query: 180 CDNGRSDGSG 151
N + G G
Sbjct: 807 SPNSAAGGGG 816
>04_01_0229 - 2897484-2900402
Length = 972
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Frame = -1
Query: 498 DHLLGSNGSNVSNLDRLGDGAIDNNHGLSNDF-------GF-VNDNHGLRDNGIDTGSGD 343
DH+ G+ N G+G N LSN+F GF +NDN + GI +G D
Sbjct: 512 DHVEGNESDLNDNSSGHGEGIGSGNKHLSNNFLNHVEGIGFDLNDNSSDHEEGIGSGKKD 571
>01_06_0926 + 33075575-33076618
Length = 347
Score = 27.9 bits (59), Expect = 7.9
Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 2/113 (1%)
Frame = -1
Query: 447 GDGAIDNNHGLSNDFGFVNDNHGLRDNG--IDTGSGDNRGRASLVDVQNDLHERSAVSNG 274
G GAI+ G + G +R +G D GD G A + + G
Sbjct: 7 GGGAIEAGDGGGDKVGDGGGADPVRGSGGGADPICGDGGG-ADQLRGNGGGSNAARGDGG 65
Query: 273 GKRRVVSIAGPTEIGTLSSTMAGPTEIGSNSCDNGRSDGSGLELIYDGRSDSD 115
G V AG ++ A P G+ D R DG G + + G SD
Sbjct: 66 GADPVRGGAGGSDAARGDGGGADPVRGGAGGSDAARGDGGGADPVRGGAGGSD 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,167,382
Number of Sequences: 37544
Number of extensions: 345699
Number of successful extensions: 1158
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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