Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0964
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43530.1 68416.m04621 hypothetical protein contains Pfam prof...    36   0.025
At3g18810.1 68416.m02389 protein kinase family protein contains ...    33   0.23 
At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing ...    31   0.71 
At1g73150.1 68414.m08460 DNA-binding bromodomain-containing prot...    30   1.2  
At4g19130.1 68417.m02823 replication protein-related similar to ...    30   1.6  
At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to ...    29   2.8  
At2g38010.1 68415.m04665 ceramidase family protein contains Pfam...    29   2.8  
At2g36270.1 68415.m04452 bZIP transcription factor family protei...    29   2.8  
At3g48470.1 68416.m05291 expressed protein                             29   3.8  
At1g72390.1 68414.m08373 expressed protein                             29   3.8  
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa...    28   5.0  
At4g01050.1 68417.m00142 hydroxyproline-rich glycoprotein family...    28   5.0  
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /...    28   5.0  

>At3g43530.1 68416.m04621 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 615

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 25/90 (27%), Positives = 38/90 (42%)
 Frame = -1

Query: 357 TGSGDNRGRASLVDVQNDLHERSAVSNGGKRRVVSIAGPTEIGTLSSTMAGPTEIGSNSC 178
           TG+ D  G   + D +N+L E S  + G   R V     TEI    +      E+G    
Sbjct: 411 TGTDDAYGSKEIDDRENELEEGSDANGGDNEREVR-EKETEIDKEVAQGDNEREVGEKET 469

Query: 177 DNGRSDGSGLELIYDGRSDSDRYKVVDDGS 88
           +  +  G G   I+DG  D +  K V + +
Sbjct: 470 EIDKEVGQGDSDIFDGNKDMELNKEVAEST 499


>At3g18810.1 68416.m02389 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 700

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 480 NGSNVSNLDRLGDGAIDNNHGLSNDFGFV-NDNHGLRDNGIDTGSGDNRGRASLVDVQND 304
           N +N +N +  G+   DNN+G + D     N+N+G  +NG D    +N G  +  + QN+
Sbjct: 79  NNNNDNNNNNNGNNNNDNNNGNNKDNNNNGNNNNGNNNNGNDNNGNNNNGNNNDNNNQNN 138


>At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing
           protein Dof zinc finger protein, Oryza sativa,
           EMBL:AB028129
          Length = 372

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = -1

Query: 492 LLGSNGSNVS--NLDRLGDGAIDNNH--GLSNDFGFVNDNHGLRDNGIDTGSGDNRGRAS 325
           L+G N  N+   N    GD    +NH  GL++  G  N+N+    NGI TG   N G   
Sbjct: 216 LMGVNNDNLVMVNHGSNGDHHHHHNHHMGLNHGVGLNNNNNNGGFNGISTGGNGNGG--G 273

Query: 324 LVDV 313
           L+D+
Sbjct: 274 LMDI 277


>At1g73150.1 68414.m08460 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 461

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 309 NDLHERSAVSNGGKRRVVSIAGPTEIGTLSSTMAGPTEIGSNSCDNGRSDGSG 151
           N +HE + +  G +   V     TE+G ++ST+     +G +S  N  S GSG
Sbjct: 395 NSVHESNTLVTGLESSKV-----TELGHVASTVRQEVNVGGSSSSNSSSSGSG 442


>At4g19130.1 68417.m02823 replication protein-related similar to
           replication protein A 70kDa [Oryza sativa] GI:13536993;
           contains Pfam profile PF00098: Zinc knuckle
          Length = 461

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -2

Query: 611 FRLRAPESGHGGHVDIDRYSVKGLRKSDSGCGNDGVATITCLGAT 477
           F L A +SG  G+     YS  G   S + CGN G  +  C GAT
Sbjct: 389 FGLHAHQSGQSGN----HYSGGGATTSCNVCGNSGHVSAKCPGAT 429


>At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to
           embryonic flower 1 [Arabidopsis thaliana] GI:15430697
          Length = 1096

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = -1

Query: 234 IGTLSSTMAGPTEIGSNSCD----NGRSDGSGLELI-YDGRSDSDRYKVVDD 94
           +  + STM   +E  S SCD    N  S  SG +   + G+  + R++VVD+
Sbjct: 307 VSRILSTMGATSENASKSCDSDQGNSESTDSGFDRTPFKGKQRNRRFQVVDE 358


>At2g38010.1 68415.m04665 ceramidase family protein contains Pfam
           domain, PF04734: Neutral/alkaline nonlysosomal
           ceramidase
          Length = 757

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
 Frame = -1

Query: 396 VNDNHGLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSNGGKRRVVSIAGPTEIGTLSS 217
           V+D    RD  +D  +     R   VD   D+  R  V NG KR+ VS    +  G +S 
Sbjct: 274 VSDFSRNRDRLLDIAATYKSSRGHSVDKSLDVKTR--VRNGSKRKFVSAFCQSNCGDVSP 331

Query: 216 TMAGPTEIGSN-SCDNGRSDGSGLELIYDGR 127
              G   I +   CD   S  +G   +  GR
Sbjct: 332 NTLGTFCIDTGLPCDFNHSTCNGQNELCYGR 362


>At2g36270.1 68415.m04452 bZIP transcription factor family protein /
           ABA-responsive element-binding protein, putative similar
           to ABA-responsive element binding protein 1 (AREB1)
           GI:9967417 from [Arabidopsis thaliana]; contains a bZIP
           transcription factor basic domain signature (PDOC00036)
          Length = 442

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 1/117 (0%)
 Frame = -1

Query: 501 DDHLLGSNGSNVSNLDRLGDGAIDNNHGL-SNDFGFVNDNHGLRDNGIDTGSGDNRGRAS 325
           D+ L+    +  +N ++    A   +H + +N  GF N+N+   + G+   SG +RG   
Sbjct: 68  DEFLVSIWNAEENNNNQQQAAAAAGSHSVPANHNGFNNNNNNGGEGGVGVFSGGSRGNED 127

Query: 324 LVDVQNDLHERSAVSNGGKRRVVSIAGPTEIGTLSSTMAGPTEIGSNSCDNGRSDGS 154
             + +   +E S    G       +   T     S    G    G+    NGRS  S
Sbjct: 128 ANNKRGIANESSLPRQGSLTLPAPLCRKTVDEVWSEIHRGGGS-GNGGDSNGRSSSS 183


>At3g48470.1 68416.m05291 expressed protein
          Length = 1017

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = -1

Query: 369 NGIDTGSGDNRGRASLVDVQNDLHERSAVSNGGKRRVVS---IAGPTEIGTLSSTMAGPT 199
           N ++ G G+N+  ASL +V N+   R+      K + +S   +A P EI  L +T+   T
Sbjct: 524 NTMENGDGENKRSASLTEV-NESSRRNKQKENRKSKNISAFVLADPNEIVDL-ATLNCDT 581

Query: 198 EIGSNSCDNGRSDGS 154
           E   +  D+  S  S
Sbjct: 582 ESDKDDGDDDASVSS 596


>At1g72390.1 68414.m08373 expressed protein
          Length = 1088

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 451  PVQVADITPVAPKQVIVATPSFPHPLSLFLRPLTEYRSMSTCPP*P 588
            P Q++  TP++P+QV   TP  P   S  + P++   ++  CP  P
Sbjct: 1012 PQQMSQRTPMSPQQVNQRTPMSPQISSGAMHPMST-SNLEGCPASP 1056


>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
           family protein contains Pfam profile PF01190: Pollen
           proteins Ole e I family
          Length = 401

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = +1

Query: 439 PVPEPVQVADITPVAPKQVIVATPSFPHPLSLFLRPLTEYRSMSTCPP*PL 591
           P+P  +      PV P   IV  PS P P   F  PL     +   PP PL
Sbjct: 326 PIPT-IPTLPPLPVLPPVPIVNPPSLPPPPPSFPVPLPPVPGLPGIPPVPL 375


>At4g01050.1 68417.m00142 hydroxyproline-rich glycoprotein family
           protein
          Length = 466

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +1

Query: 439 PVPEPVQVADITPVAPKQVI---VATPSFPHPLSLFLRPLTEYRSMSTCPP 582
           PVPEPV V  I      QVI     T + P P S   RPL+ Y S     P
Sbjct: 410 PVPEPVPVPAIEAAVAAQVITEPTETEAKPKPHS---RPLSPYASYPDLKP 457


>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
           glycine-rich protein (GRP2) identical to Glycine-rich
           protein 2b (AtGRP2b) [Arabidopsis thaliana]
           SWISS-PROT:Q38896; contains Pfam domains PF00313:
           'Cold-shock' DNA-binding domain and PF00098: Zinc
           knuckle
          Length = 201

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/85 (22%), Positives = 33/85 (38%)
 Frame = -1

Query: 405 FGFVNDNHGLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSNGGKRRVVSIAGPTEIGT 226
           FGF+  + G  D  +   S  + G  SL   +  +     V N G+ + + ++GP     
Sbjct: 28  FGFITPSDGGDDLFVHQSSIRSEGFRSLA-AEESVEFDVEVDNSGRPKAIEVSGPDGAPV 86

Query: 225 LSSTMAGPTEIGSNSCDNGRSDGSG 151
             ++  G +  G      G   G G
Sbjct: 87  QGNSGGGGSSGGRGGFGGGGGRGGG 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,193,815
Number of Sequences: 28952
Number of extensions: 245798
Number of successful extensions: 862
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)